Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SD207_RS01580 Genome accession   NZ_CP138324
Coordinates   336538..337002 (+) Length   154 a.a.
NCBI ID   WP_032046364.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain JBAB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 331538..342002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS01565 (SD207_01565) - 331540..332322 (+) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  SD207_RS01570 (SD207_01570) - 332338..336054 (+) 3717 WP_318787767.1 PilC/PilY family type IV pilus protein -
  SD207_RS01575 (SD207_01575) pilY2 336068..336544 (+) 477 WP_031380019.1 type IV pilin protein Machinery gene
  SD207_RS01580 (SD207_01580) pilE 336538..337002 (+) 465 WP_032046364.1 type IV pilin protein Machinery gene
  SD207_RS01585 (SD207_01585) rpsP 337150..337401 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SD207_RS01590 (SD207_01590) rimM 337421..337969 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  SD207_RS01595 (SD207_01595) trmD 338015..338755 (+) 741 WP_262094040.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SD207_RS01600 (SD207_01600) rplS 338963..339331 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  SD207_RS01605 (SD207_01605) - 339385..340326 (-) 942 WP_104133477.1 triacylglycerol lipase -
  SD207_RS01610 (SD207_01610) - 340441..341475 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16782.40 Da        Isoelectric Point: 9.3896

>NTDB_id=824591 SD207_RS01580 WP_032046364.1 336538..337002(+) (pilE) [Acinetobacter baumannii strain JBAB]
MVNKIKGFTLIELMIAVAIIAVLAAIAYPSYLEHVRHTKRVEMQTTLQQIAMQIQRYKIANFKVVGATSSDFNIAASYPV
QGTPLYIVNLTPVTSGSLAAETWILTATPIANTPQSGDGHIVLNYRGERCWTKGTDINSGRACVPSVTSNWDGK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=824591 SD207_RS01580 WP_032046364.1 336538..337002(+) (pilE) [Acinetobacter baumannii strain JBAB]
GTGGTAAATAAAATAAAAGGTTTTACTTTAATTGAGTTAATGATTGCTGTAGCAATTATTGCGGTTTTAGCAGCGATAGC
TTATCCCTCTTATCTGGAGCATGTCCGTCATACCAAACGTGTGGAAATGCAAACTACTTTGCAACAGATTGCTATGCAGA
TTCAGCGATACAAGATTGCAAACTTTAAAGTAGTTGGAGCAACAAGTTCAGATTTTAATATTGCAGCATCCTATCCAGTA
CAAGGTACGCCTCTTTATATAGTCAATCTGACCCCTGTTACATCAGGTTCTTTGGCTGCTGAAACATGGATATTAACTGC
GACACCGATTGCAAATACTCCACAATCTGGAGATGGGCATATTGTCTTAAATTATCGTGGTGAACGGTGCTGGACAAAAG
GGACCGATATTAACAGTGGTAGGGCTTGTGTTCCTTCTGTGACCTCGAATTGGGATGGCAAGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

44.898

95.455

0.429
  comF Acinetobacter baylyi ADP1

43.919

96.104

0.422