Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SD207_RS00285 Genome accession   NZ_CP138324
Coordinates   61546..62811 (+) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain JBAB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56546..67811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD207_RS00255 (SD207_00255) mutY 56715..57749 (-) 1035 WP_001113866.1 A/G-specific adenine glycosylase -
  SD207_RS00260 (SD207_00260) - 57890..58252 (-) 363 WP_000130110.1 HIT family protein -
  SD207_RS00265 (SD207_00265) - 58438..59175 (-) 738 WP_000100767.1 dienelactone hydrolase family protein -
  SD207_RS00270 (SD207_00270) - 59347..59505 (-) 159 WP_000490267.1 DUF1328 domain-containing protein -
  SD207_RS00275 (SD207_00275) - 59700..60158 (+) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  SD207_RS00280 (SD207_00280) - 60271..61440 (+) 1170 WP_002046330.1 PQQ-dependent sugar dehydrogenase -
  SD207_RS00285 (SD207_00285) rarA 61546..62811 (+) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  SD207_RS00290 (SD207_00290) - 62827..63666 (-) 840 WP_002046338.1 formate/nitrite transporter family protein -
  SD207_RS00295 (SD207_00295) - 63952..64155 (-) 204 WP_000418560.1 hypothetical protein -
  SD207_RS00300 (SD207_00300) purC 64348..65067 (-) 720 WP_002046368.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  SD207_RS00305 (SD207_00305) - 65105..65707 (-) 603 WP_001177091.1 hypothetical protein -
  SD207_RS00310 (SD207_00310) dapA 65723..66616 (-) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  SD207_RS00315 (SD207_00315) pncA 66946..67590 (+) 645 WP_002017318.1 bifunctional nicotinamidase/pyrazinamidase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=824579 SD207_RS00285 WP_001285409.1 61546..62811(+) (rarA) [Acinetobacter baumannii strain JBAB]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=824579 SD207_RS00285 WP_001285409.1 61546..62811(+) (rarA) [Acinetobacter baumannii strain JBAB]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAGTCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCTACCACTGAAAACCCAT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGATAGTGAAGCAATTCAGACA
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTAGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTACCAATGCGGTTGTAGTAAAAGTTGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCAGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTTGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGACTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387