Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QJR31_RS06825 Genome accession   NZ_CP124262
Coordinates   1365459..1367852 (+) Length   797 a.a.
NCBI ID   WP_046328086.1    Uniprot ID   -
Organism   Listeria seeligeri strain L182     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1360459..1372852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJR31_RS06805 (QJR31_06805) - 1361611..1362759 (+) 1149 WP_185488525.1 cysteine desulfurase family protein -
  QJR31_RS06810 (QJR31_06810) mnmA 1362778..1363893 (+) 1116 WP_075702955.1 tRNA 2-thiouridine(34) synthase MnmA -
  QJR31_RS06815 (QJR31_06815) - 1364012..1364752 (+) 741 WP_046328085.1 alpha/beta hydrolase -
  QJR31_RS06820 (QJR31_06820) - 1364795..1365433 (+) 639 WP_139591419.1 tetratricopeptide repeat protein -
  QJR31_RS06825 (QJR31_06825) recD2 1365459..1367852 (+) 2394 WP_046328086.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QJR31_RS06830 (QJR31_06830) pieS 1367891..1369330 (-) 1440 WP_185488523.1 two component system sensor histidine kinase PieS -
  QJR31_RS06835 (QJR31_06835) pieR 1369327..1370013 (-) 687 WP_003747796.1 two component system response regulator PieR -
  QJR31_RS06840 (QJR31_06840) - 1370180..1371676 (+) 1497 WP_185432311.1 ABC transporter permease -
  QJR31_RS06845 (QJR31_06845) - 1371685..1372380 (+) 696 WP_003747793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 89978.08 Da        Isoelectric Point: 4.8447

>NTDB_id=824489 QJR31_RS06825 WP_046328086.1 1365459..1367852(+) (recD2) [Listeria seeligeri strain L182]
MAEQESLALFDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAKF
GQQFKAERFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITRILSDPSLLNTVPKLPSGAAESLLASLQEN
QGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFMLD
SVCMQQGHVYMEQEALLAEVTYLLEESEGVRIDQAILMEQVEKLAEEQKIITENTRVYMPSLYYSESGFAHHVKRMLKQT
EYQEQFPQSEFLLALGELEERIGVHYGDSQREALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKDG
ATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQV
VLVGDQDQLPSVGPGQVLKDILHSKQIPTVALSDIYRQKDGSSIIEMAHNIKEGMLPADFTKNSADRSFFHCTVNQIGDV
VEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGELKYRVHDKVLQLINQPEKNVFNG
DIGEIVSIIYAKENTEKQDMIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTGV
TRSKQFLILCGEEEAFRMGVERVDENKRNTTLSERLTSEDVMLEQMTNKRILTVENIMEIDPMIGMEGITPDQFMAG

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=824489 QJR31_RS06825 WP_046328086.1 1365459..1367852(+) (recD2) [Listeria seeligeri strain L182]
ATGGCTGAACAAGAATCACTCGCCTTATTTGATACACCAGAAGAATTATTTATGAAGGGCACGATGCTGTCCACCATTTT
TTATAATGCCGAAAACCTCTTTTCTGTTGTGCGAATTCTTGTAAAAGAAACGAATGCAGACTGGGATGAAAAAGATATTA
TTGTGACTGGTTTTTTTCCGGCACTTCACGAACAAGAAGTTTATACTTTTTATGGAAAAATGCAAGAACATGCCAAATTT
GGTCAACAATTCAAAGCAGAGCGTTTTAGGAAAGAAATGCCACAATCACGTGCGGGCTTAATTAATTATTTATCTGGAGA
GCTTTTTAAAGGTATTGGTAAAGTAACCGCGGAAAATATTGTCGACACAATTGGCGATGATGCAATTACGCGAATCTTAT
CTGATCCGAGCTTATTAAATACGGTTCCAAAACTTCCATCCGGTGCGGCAGAGAGCTTGCTTGCTTCACTTCAAGAAAAT
CAAGGTTTAGAACATGTCATGGTGGGACTTAATGAATATGGATTCGGTCCGCAACTTTCCATGAAGATTTTTCAAGCTTA
TAAGCAAAATGCGATTGAAGTGTTAGAAAATAATCCTTATAAATTAATTGAAGACGTCAAAGGAATTGGTTTTCAGCGTG
CGGATGAACTTGGTCGAAAACTTGGCCTCGGAGGAAACCATCCAGAGCGGCTTCGTGCCGGGATTTTATTTATGCTAGAT
TCGGTTTGTATGCAGCAAGGGCATGTTTATATGGAACAAGAAGCCTTACTTGCAGAAGTAACTTATTTACTGGAAGAGAG
TGAAGGGGTTCGAATTGATCAAGCGATTTTAATGGAACAAGTCGAGAAACTCGCTGAAGAGCAAAAAATTATCACTGAAA
ATACACGTGTTTATATGCCCTCGCTTTATTATTCAGAAAGCGGGTTTGCTCATCATGTAAAAAGAATGCTTAAACAAACG
GAATACCAAGAACAATTTCCTCAGTCGGAATTTTTGCTCGCGCTCGGTGAATTAGAAGAGCGAATTGGCGTTCATTACGG
GGATTCCCAGCGTGAAGCCTTAGAACAAGCATTAATGTCACCGATGCTTGTGCTAACTGGTGGTCCTGGAACAGGGAAAA
CGACTGTTATTAAAGGAATTGTGGAATTATATGCAGAATTAAATGGTGTAAGTCTCGACCCACATGCCTATAAAGATGGA
GCGACTTTCCCAGTGTTATTAGCAGCTCCAACTGGAAGAGCGGCTAAACGGATGTCAGAATCTACAGGGCTTCCAGCAAT
GACTATTCACCGTTTGCTTGGTATGAATGGGCAGGAACAAATGGATGATGATGCGGAAAGATTAATTGATGGGCGACTTT
TAATTGTGGACGAAATGTCGATGGTTGATATTTGGCTTGCTAATCAGCTGTTTCGTGCGTTACCAGCTCATATGCAAGTG
GTGTTAGTTGGCGACCAAGATCAGTTACCATCAGTCGGACCAGGGCAAGTTTTAAAAGATATCCTTCATTCGAAACAAAT
CCCAACCGTTGCACTTTCTGATATTTATCGGCAAAAAGATGGTTCTTCTATCATTGAAATGGCTCATAATATCAAAGAGG
GAATGCTCCCAGCCGATTTTACAAAAAACAGTGCTGATCGGTCGTTCTTTCATTGTACTGTGAACCAAATTGGCGATGTC
GTGGAGCAAGTTGTAAAAAATGCTAAAAATAAAGGATTTCGAGCAAAAGACATCCAAGTGTTAGCACCAATGTATCGCGG
ACCAGCTGGAATTGATATTTTAAATAAAAAATTGCAAGAAATTTTCAATCCTAATGATACTGGCCGACGAAAAGAAGTGC
AATTTGGTGAATTAAAATATCGTGTCCATGACAAAGTGTTGCAATTAATTAATCAACCTGAAAAAAATGTCTTTAATGGT
GATATAGGAGAAATTGTCTCGATTATTTATGCCAAAGAAAATACGGAAAAACAAGATATGATTGTGGTGCAATTTGATCA
AACAGAAGTTTCTTATTACCGGCAAGAATTCAATCAATTGACTCATGCATACTGTTGTTCCATTCATAAAGCTCAGGGAA
GTGAGTTTCCTATTGTAATTATGCCGATTGTACGTAGTTATTACCGAATGCTTAGACGTGACCTGCTTTATACGGGAGTC
ACTCGAAGTAAACAATTTTTGATTCTTTGCGGAGAAGAAGAGGCGTTTCGGATGGGAGTGGAGCGGGTCGATGAAAATAA
ACGTAACACGACACTTTCAGAACGTTTAACTAGCGAAGATGTAATGCTAGAACAAATGACGAATAAACGAATATTAACGG
TTGAAAACATTATGGAGATTGACCCAATGATTGGAATGGAAGGAATAACACCAGATCAGTTTATGGCAGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-553)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.868

98.871

0.572