Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8625_RS06085 Genome accession   NZ_AP026923
Coordinates   1201693..1203441 (-) Length   582 a.a.
NCBI ID   WP_317649055.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700054     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1196693..1208441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8625_RS06060 - 1197884..1198021 (-) 138 Protein_1199 SapB/AmfS family lantipeptide -
  R8625_RS06065 (PC0054_11990) - 1198223..1198796 (-) 574 Protein_1200 lysostaphin resistance A-like protein -
  R8625_RS06070 (PC0054_12000) rplL 1198983..1199351 (-) 369 WP_317649054.1 50S ribosomal protein L7/L12 -
  R8625_RS06075 (PC0054_12010) rplJ 1199427..1199927 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  R8625_RS06080 (PC0054_12020) - 1200177..1201436 (-) 1260 WP_000862484.1 TRZ/ATZ family protein -
  R8625_RS06085 (PC0054_12030) rcrQ 1201693..1203441 (-) 1749 WP_317649055.1 ABC transporter ATP-binding protein Regulator
  R8625_RS06090 (PC0054_12040) - 1203443..1205167 (-) 1725 WP_000681689.1 ABC transporter ATP-binding protein -
  R8625_RS06095 (PC0054_12050) msrB 1205225..1206163 (-) 939 WP_317649056.1 peptide-methionine (R)-S-oxide reductase MsrB -
  R8625_RS06100 (PC0054_12060) - 1206192..1206383 (-) 192 WP_001808580.1 hypothetical protein -
  R8625_RS06105 (PC0054_12070) thrB 1206459..1207328 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64870.32 Da        Isoelectric Point: 7.3120

>NTDB_id=82440 R8625_RS06085 WP_317649055.1 1201693..1203441(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700054]
MKRQTVNQTLKRLAVDLANHSFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKIAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRASLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQFPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=82440 R8625_RS06085 WP_317649055.1 1201693..1203441(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700054]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCGTAGATTTAGCAAACCATTCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTGCGAGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCTTTTGTAGATAGGCAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTCTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAATGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGATAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGCATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTTCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.434

97.766

0.366

Multiple sequence alignment