Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M2Y48_RS00275 Genome accession   NZ_AP023344
Coordinates   63536..64111 (+) Length   191 a.a.
NCBI ID   WP_212847116.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 58536..69111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y48_RS00250 (JSHR3_00540) uvrD 59227..61272 (+) 2046 WP_248419914.1 ATP-dependent helicase -
  M2Y48_RS00255 (JSHR3_00550) flgA 61269..61925 (+) 657 WP_248419915.1 flagellar basal body P-ring formation chaperone FlgA -
  M2Y48_RS00260 (JSHR3_00560) - 61935..62498 (+) 564 WP_000780125.1 UbiX family flavin prenyltransferase -
  M2Y48_RS00265 (JSHR3_00570) coaD 62498..62971 (+) 474 WP_014727242.1 pantetheine-phosphate adenylyltransferase -
  M2Y48_RS00270 (JSHR3_00580) tmk 62973..63548 (+) 576 WP_108304264.1 dTMP kinase -
  M2Y48_RS00275 (JSHR3_00590) comFC 63536..64111 (+) 576 WP_212847116.1 ComF family protein Machinery gene
  M2Y48_RS00280 (JSHR3_00600) - 64144..64488 (+) 345 Protein_55 N-6 DNA methylase -
  M2Y48_RS00285 (JSHR3_00610) - 64487..65278 (-) 792 WP_212847132.1 Eco47II family restriction endonuclease -
  M2Y48_RS00290 (JSHR3_00620) dcm 65247..66278 (-) 1032 WP_212847182.1 DNA (cytosine-5-)-methyltransferase -
  M2Y48_RS07880 - 66328..66853 (+) 526 Protein_58 restriction endonuclease subunit S -
  M2Y48_RS00300 - 66905..67461 (+) 557 Protein_59 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21230.77 Da        Isoelectric Point: 8.5545

>NTDB_id=82440 M2Y48_RS00275 WP_212847116.1 63536..64111(+) (comFC) [Helicobacter pylori strain JSHR3]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGCLRAANTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNAKVHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=82440 M2Y48_RS00275 WP_212847116.1 63536..64111(+) (comFC) [Helicobacter pylori strain JSHR3]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTTAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCTATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGTGTTTAAGGGCTGCTAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACGCAAAAGTGCATTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.241

100

0.942
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366

Multiple sequence alignment