Detailed information NTG0824388

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: R3F78_RS26070
• Genome accession: NZ_CP138301
• Coordinates: 4862868..4863920 (+)
• Length: 350 a.a.
• NCBI ID: WP_014494880.1
• Uniprot ID: -
• Organism: Bradyrhizobium japonicum strain CNPSo 29
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 4857868..4868920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3F78_RS26050 (R3F78_26035)	-	4858507..4860096 (+)	1590	WP_028170233.1	ABC transporter substrate-binding protein	-
R3F78_RS26055 (R3F78_26040)	-	4860157..4861080 (+)	924	WP_014494877.1	ABC transporter permease	-
R3F78_RS26060 (R3F78_26045)	-	4861077..4861898 (+)	822	WP_038936568.1	ABC transporter permease	-
R3F78_RS26065 (R3F78_26050)	-	4861895..4862875 (+)	981	WP_039147918.1	ABC transporter ATP-binding protein	-
R3F78_RS26070 (R3F78_26055)	amiE	4862868..4863920 (+)	1053	WP_014494880.1	ABC transporter ATP-binding protein	Regulator
R3F78_RS26075 (R3F78_26060)	-	4864128..4864346 (+)	219	WP_038958760.1	hypothetical protein	-
R3F78_RS26080 (R3F78_26065)	-	4865250..4865468 (-)	219	WP_051664569.1	methyltransferase family protein	-
R3F78_RS26085 (R3F78_26070)	-	4865735..4867477 (-)	1743	WP_039147927.1	adenylate/guanylate cyclase domain-containing protein	-
R3F78_RS26090 (R3F78_26075)	-	4867853..4868599 (+)	747	WP_028170235.1	C13 family peptidase	-

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 38471.91 Da
• Isoelectric Point: 6.9600

>NTDB_id=824388 R3F78_RS26070 WP_014494880.1 4862868..4863920(+) (amiE) [Bradyrhizobium japonicum strain CNPSo 29]
MHEPQDMRGEARSDDDLILSIEDLAVHFPMGGGLLGRSRRVLRAVDGVDLSLRRGECLGLVGESGSGKSTVALSILGLLT
PTRGRIVLDGQVVTNRQSGDRKSLARTVQIVFQDPYASLNPRQTVRRTLEDPLRVHGVTAKSEIEDRVATMLRHVGLRPE
QADRYPHEFSGGQRQRIGIARALILNPRIVICDEPVSALDVSIRAQIINLLLELKDTLGLSYIMISHDLGVVEHMSDRVA
VMYLGRIVENGHWREIFERPAHPYTQALIAAIPDPLRHAPLATTGGDLPNPLNPPNGCAFSPRCRYAEAVCRHEPGPVLE
TRADGHEVRCWRADEIAGQTQLASTEGGHP

Nucleotide

• Length: 1053 bp

>NTDB_id=824388 R3F78_RS26070 WP_014494880.1 4862868..4863920(+) (amiE) [Bradyrhizobium japonicum strain CNPSo 29]
ATGCATGAGCCGCAAGACATGCGGGGTGAAGCGAGGTCGGACGACGATCTCATTCTCAGCATCGAGGATCTCGCGGTTCA
TTTTCCGATGGGGGGCGGCCTGCTGGGCCGCAGCCGGCGGGTGCTCCGTGCCGTCGACGGTGTCGATCTCAGCCTGAGAC
GGGGCGAATGCCTCGGCCTCGTCGGCGAGTCCGGCTCGGGCAAGTCGACCGTCGCATTGTCGATCCTGGGGCTCCTGACG
CCGACGCGCGGCCGTATCGTGCTGGACGGGCAGGTGGTGACGAACAGGCAGTCCGGCGACCGAAAGTCGCTGGCCCGCAC
CGTGCAGATCGTCTTTCAGGATCCCTACGCCTCGCTCAACCCACGCCAGACCGTCCGCCGCACGCTGGAAGATCCCCTGC
GTGTGCATGGCGTGACCGCGAAAAGCGAGATCGAGGACCGTGTTGCGACGATGCTGCGGCATGTCGGCCTGCGGCCGGAA
CAGGCCGACCGCTATCCGCACGAATTCTCCGGTGGCCAGCGCCAGCGCATCGGGATTGCGCGCGCCCTGATCCTCAATCC
CAGGATCGTCATCTGCGACGAGCCGGTATCGGCGCTCGACGTCTCGATCCGCGCCCAGATCATCAATTTGCTGCTGGAAT
TGAAGGACACGCTCGGTCTCTCCTACATCATGATCAGCCACGACCTCGGCGTCGTCGAGCACATGAGCGACCGCGTCGCC
GTCATGTATCTCGGCCGCATCGTCGAGAACGGCCACTGGCGCGAAATTTTTGAGCGCCCGGCGCACCCCTATACGCAAGC
CCTGATCGCGGCCATCCCCGATCCGCTGCGTCATGCGCCGTTGGCGACGACAGGCGGCGACCTTCCCAACCCGCTCAATC
CGCCGAACGGATGCGCCTTCAGCCCGCGTTGCCGGTACGCGGAGGCCGTGTGTCGTCACGAGCCCGGTCCGGTGCTGGAA
ACGCGCGCCGATGGACATGAGGTGAGGTGCTGGCGGGCGGACGAGATTGCGGGGCAGACGCAATTGGCTTCGACCGAGGG
CGGGCATCCCTAG

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (248-311)

• ABC transporter (ABC_tran) (46-196)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus thermophilus LMG 18311	39.329	93.714	0.369
amiE	Streptococcus thermophilus LMD-9	39.329	93.714	0.369
amiE	Streptococcus salivarius strain HSISS4	37.685	96.286	0.363