Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QEZ42_RS07945 Genome accession   NZ_CP124202
Coordinates   1562812..1565244 (+) Length   810 a.a.
NCBI ID   WP_031419245.1    Uniprot ID   -
Organism   Lysinibacillus sphaericus strain FY22.JlqLf     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1557812..1570244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEZ42_RS07920 - 1558176..1558835 (+) 660 WP_012295403.1 tetratricopeptide repeat protein -
  QEZ42_RS07925 - 1559029..1560471 (+) 1443 WP_281487019.1 MDR family MFS transporter -
  QEZ42_RS07930 - 1560568..1561305 (-) 738 WP_012295401.1 GTP pyrophosphokinase family protein -
  QEZ42_RS07935 - 1561572..1561859 (-) 288 WP_012295400.1 hypothetical protein -
  QEZ42_RS07940 hisA 1561843..1562622 (-) 780 WP_012295399.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  QEZ42_RS07945 recD2 1562812..1565244 (+) 2433 WP_031419245.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QEZ42_RS07950 hpaB 1565367..1566800 (+) 1434 WP_099805916.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  QEZ42_RS07955 corA 1567267..1568232 (+) 966 WP_012295396.1 magnesium/cobalt transporter CorA -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90888.37 Da        Isoelectric Point: 4.8923

>NTDB_id=823905 QEZ42_RS07945 WP_031419245.1 1562812..1565244(+) (recD2) [Lysinibacillus sphaericus strain FY22.JlqLf]
MTDHLDLFELNKFFILGRPIVSIFHNTQNMYSIIRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGRKTAETIVEKLGANALRLILEDPSALDAVPRLSSEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAVELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISKACIELREDGKVCGEETRLYLPSLYFSEVGIASKILTLVERNSKT
EHFSKDEIRKAIGETEELLQVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPQDLTSKTTDRSFIKSSVDQIGNVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVKGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMDVDEVMVEVEAVPVKQEAVQEIAIEDHKLTVETAPYIHPMIGMD
DVSPYDFLEM

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=823905 QEZ42_RS07945 WP_031419245.1 1562812..1565244(+) (recD2) [Lysinibacillus sphaericus strain FY22.JlqLf]
ATGACAGATCATCTCGATTTATTTGAACTCAATAAATTTTTTATTCTCGGACGTCCGATCGTCTCTATTTTTCATAACAC
CCAAAATATGTATTCCATTATTCGAGTGAAAATTCAAGAGACAAACTTACAATATGAAGATAAAGAAATTATTGTTGTTG
GCTATTTTCCACCGTTACAAATGGATGAGCAATACCGCTTTACAGGTATATTAAAACAGCATCCTAAATATGGTGCACAA
TTTCAAATCGAGACATTTACAAAAGAGGTACCCGCTACTGAACAAGGAATTATTCATTATTTATCCAGTGACCTATTTGT
GGGAATTGGGAGAAAAACAGCTGAAACCATTGTTGAAAAACTGGGTGCTAATGCATTACGCCTTATTTTAGAAGATCCGA
GTGCACTGGATGCTGTTCCACGTTTATCATCTGAAAAAAAAGAAGTGATTCATCGGACGATTGAGCAAAACCTTGGTTTA
GAACGGGTAATGATACAGTTGAATGAATGGGGCTTTGGTCCACAGCTGGGAATGAAGATCTATCAAACCTATCGAACGGA
GGCTGTTGAATTACTAACAGAAAATCCATATCGCTTGATAGAAGATGTGGAAGGTGTTGGGTTCTTTCGAGCAGATGAGC
TTGGTGCAAAGCTAGGGATTACCGGTAAACATCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACGGCTGCA
TTATCTGACGGGCATGTATATTTAGACGCGGAGCATGTACTACCACTTGTAAAGGAAATGCTTGAACAAAGTCAACGTCA
GGAAATTCCGTTTGAAGACATCTCAAAAGCATGTATTGAGCTACGGGAAGATGGAAAAGTTTGCGGAGAAGAAACAAGGT
TATATTTGCCTTCACTTTATTTTTCTGAGGTAGGAATTGCCTCCAAAATATTGACGCTTGTTGAACGAAATAGCAAGACT
GAACATTTTAGCAAAGATGAGATTCGTAAAGCGATTGGTGAAACTGAGGAACTACTCCAGGTGACATATGCTGAAACACA
AGCAAATGCTATTGAACAGGCTTTAAATTCAGCTGTAATGATTTTAACAGGTGGACCTGGTACGGGTAAAACGACTGTTG
TACGTGGGGTTGTTGAAGTGTATGCGAAGCTTCATGGTTTATCATTGAATCCAAAAGAATATGCTCAAAAAGAGGAGCCT
TTTCCCATTATCCTTTGTGCACCCACTGGGCGAGCTGCCAAGCGCTTAGCTGAATCGACTGAACTACCAGCTATGACCAT
TCATCGTTTACTTGGCTTTACAGGTCAAGAAAAAGAAGAAGAGACTGAACGGGAGGTAACAGGTAAGCTTATTATTGTAG
ATGAAATGTCCATGGTGGATACTTGGCTTGCTCATCAGTTATTAAAAGCTTTACATGAGGATGTACAGGTTGTCTTTGTA
GGGGACCAGGACCAATTACCGCCTGTAGGACCAGGACAGGTATTAAAGGATTTATTAGCATCCAAGCAACTCCCAACGGT
GGAATTGACAGATGTTTACCGACAAGCAGAGGGTTCTACCATTATTGAATTAGCCCATCAAATAAAAAAAGGAACCATTC
CGCAAGATTTAACATCGAAAACTACTGATCGCTCGTTTATTAAATCTTCCGTCGATCAGATTGGAAATGTTGTGACACAG
GTAGTAAAAAGTGCCGTTGCTAAAGGGCAAGAAATTCGTAATATTCAGGTGTTAGCACCGATGTATAAAGGTCCCGCTGG
CATTGATAATTTAAATAAGATGATTCAAGAGCTTATTAATCCTAATGATACAGGGACACGAAAGGAACTTGTCTTTGGGG
ACGTAACGTATCGGATAAAGGATAAAGTTCTGCAGCTAGTCAATCAGCCTGAAAGTAATGTTTTTAATGGGGATATGGGA
GAGGTCATTAGTATTATTAAGGCAAAGGAGACAGTAGAAAAACAAGATTTACTAATTGTATCCTTTGATGGCATTGAAGT
GACCTATCAACGCAGTGACCTCAATCAATTGACACTTGCTTATTGCTGCTCCATTCATAAATCTCAAGGTTCAGAGTTTC
AAACCGTCATTATGCCTGTTGTCAAAGGGTATTCGAAAATGCTGCGGCGGAATCTTTTATACACAGGTATTACAAGAGCG
AAAAACTTTTTAATTTTATGTGGGGAACCAGACGTTCTAGCAGATGGCTTGCAGCGGACAGATGATTTACAGCGTTTTAC
TTCGTTGCGTGCTCGATTAAATCCAATGGATGTCGACGAAGTAATGGTTGAGGTTGAGGCAGTTCCAGTAAAACAAGAGG
CTGTGCAAGAAATAGCTATCGAGGACCATAAATTAACAGTTGAAACAGCTCCTTATATTCATCCAATGATTGGGATGGAT
GATGTCTCCCCCTATGATTTTTTGGAGATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

AAA domain (AAA_30)

(343-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.211

100

0.525