Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   QHF92_RS14005 Genome accession   NZ_CP123994
Coordinates   2765939..2768299 (-) Length   786 a.a.
NCBI ID   WP_060399139.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2760939..2773299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS13985 (QHF92_13985) - 2761015..2762568 (+) 1554 WP_060399138.1 SH3 domain-containing protein -
  QHF92_RS13990 (QHF92_13990) dtd 2762594..2763034 (-) 441 WP_003237504.1 D-aminoacyl-tRNA deacylase -
  QHF92_RS13995 (QHF92_13995) relA 2763047..2765251 (-) 2205 WP_003237506.1 GTP diphosphokinase -
  QHF92_RS14000 (QHF92_14000) - 2765421..2765933 (-) 513 WP_003237508.1 adenine phosphoribosyltransferase -
  QHF92_RS14005 (QHF92_14005) recJ 2765939..2768299 (-) 2361 WP_060399139.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  QHF92_RS14010 (QHF92_14010) - 2768366..2768689 (-) 324 WP_003237512.1 lipopolysaccharide assembly LapA domain-containing protein -
  QHF92_RS14015 (QHF92_14015) - 2768766..2769263 (-) 498 WP_003237514.1 cation:proton antiporter regulatory subunit -
  QHF92_RS14020 (QHF92_14020) secDF 2769418..2771631 (-) 2214 WP_060399140.1 protein translocase subunit SecDF -
  QHF92_RS14025 (QHF92_14025) comN 2771670..2771966 (-) 297 WP_003222684.1 post-transcriptional regulator ComN -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88211.79 Da        Isoelectric Point: 5.0087

>NTDB_id=823741 QHF92_RS14005 WP_060399139.1 2765939..2768299(-) (recJ) [Bacillus inaquosorum strain M3]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESAKLFLHTKDADFYDPFEMKGMKEAAERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTTRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNEIANNTLTEEDFIPVQEVDLVCDVEDITVESITEMNQLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQLDCVGFNKGELEEGIVPGTRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSALPSAKRAIVSFKEDSTTLLQTEDLRREVHVISSVDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGVKKRDLTDSQTYQEKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=823741 QHF92_RS14005 WP_060399139.1 2765939..2768299(-) (recJ) [Bacillus inaquosorum strain M3]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCAAAGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGACCCTTTTGAAATGAAGGGCATGAAAGAAGCGGCAGAGCGTATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACACTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGATATGGCCCTAATGAACAGGCGTTCCGTTCGATTA
AAGAACGGGGCTTCTCTCTGATTATTACGGTTGATACAGGAATTGCCGCTGTGCATGAAGCAAAGGTGGCAAAGGAACTT
GGGCTGGATGTCATTATAACCGATCACCATGAGCCGGGACCGGAGCTCCCGGATGTTCACGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACCTACCCGTTTAAAGAATTGGCCGGGGTCGGAGTCGCGTTTAAGCTTGCTCACGCTTTATTGGGCGAAC
TTCCAGATGAACTGCTTGACTTGGCGGCAATCGGTACTATTGCCGATCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTTCGGCGGACGACTCGGCTGGGTTTAAAAGAGCTGATCAAGCTGTCAGGCGGGGACAT
CGGAGAAGCGAACGAAGAAACAGTCGGTTTCCAGCTTGCACCAAGGCTGAATGCCGTCGGAAGAATTGAACAGGCTGATC
CCGCTGTTCATTTGCTCATGTCAGAGGATCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATTGATCAGCTGAACAAAGAA
CGCCAAAAGATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAGCAAGGTCTCAATCAAACTGCAATTGT
CGTAGCCAAAGCCGGGTGGAATCCGGGAGTCGTCGGGATTGTGGCTTCAAAGCTAGTGGACCGTTTCTACAGACCGGCCA
TTGTGCTCGGCATTGATGAAGAAAAAGGGATTGCTAAAGGTTCGGCCCGAAGCATCAGGGGCTTTAATTTATTCGAGAGC
CTTTCTGAATGCAGAGATATTCTCCCTCATTTCGGCGGCCATCCAATGGCGGCGGGGATGACGCTGAATGCCGAAGATGT
GCCGGATTTGCGTAACAGGCTGAATGAAATAGCGAACAACACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTCG
ATCTTGTCTGCGATGTCGAGGACATTACAGTTGAAAGCATCACAGAGATGAACCAGCTGTCCCCATTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCTGTGCTGGAAGATGTTCGCAAGATCGGGGCTAATAAAAATCATGTCAAAAT
GACGGTCAGAAACGAGTCATCCCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTTGAAGAAGGCATCGTCCCGGGTA
CAAGAATTTCAATTGTCGGCGAGATGTCAATCAACGAATGGAACAATAGAAAAAAACCGCAGCTTATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGATGTGGGAAGACACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAGACTGAAGACCTTCGCCGCGAAGTGCACGTCATTA
GCTCTGTAGATCAAGCGAAGGCGTTTGACCTCGATGGTGCATATATTGTATTACTTGATCCGCCGCCTTCGTTGGACATG
CTTGCACGTTTGCTGGAAGGCAAGGCGCCTGAGCGGATATATTTCATTTTTCTCAATCATGAGGACCACTTTTTATCAAC
ATTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGACGTGAAAAAACACGGTT
CAGAGCTTGCAAGACATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTAGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGGTTAGCGGAGTAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGAGAA
ACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

97.201

100

0.972