Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QHF92_RS08890 Genome accession   NZ_CP123994
Coordinates   1794847..1795626 (+) Length   259 a.a.
NCBI ID   WP_003238551.1    Uniprot ID   A0A9W5PD99
Organism   Bacillus inaquosorum strain M3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1789847..1800626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS08870 (QHF92_08870) trmFO 1790540..1791847 (+) 1308 WP_060398623.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QHF92_RS08875 (QHF92_08875) xerC 1791915..1792829 (+) 915 WP_060398624.1 tyrosine recombinase XerC -
  QHF92_RS08880 (QHF92_08880) clpQ 1792842..1793387 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  QHF92_RS08885 (QHF92_08885) hslU 1793395..1794807 (+) 1413 WP_258459151.1 HslU--HslV peptidase ATPase subunit -
  QHF92_RS08890 (QHF92_08890) codY 1794847..1795626 (+) 780 WP_003238551.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QHF92_RS08895 (QHF92_08895) flgB 1796008..1796397 (+) 390 WP_060398625.1 flagellar basal body rod protein FlgB -
  QHF92_RS08900 (QHF92_08900) flgC 1796397..1796849 (+) 453 WP_003238546.1 flagellar basal body rod protein FlgC -
  QHF92_RS08905 (QHF92_08905) fliE 1796861..1797181 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  QHF92_RS08910 (QHF92_08910) fliF 1797227..1798837 (+) 1611 WP_080429004.1 flagellar basal-body MS-ring/collar protein FliF -
  QHF92_RS08915 (QHF92_08915) fliG 1798850..1799866 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  QHF92_RS08920 (QHF92_08920) fliH 1799859..1800611 (+) 753 WP_060398627.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29036.26 Da        Isoelectric Point: 4.7210

>NTDB_id=823720 QHF92_RS08890 WP_003238551.1 1794847..1795626(+) (codY) [Bacillus inaquosorum strain M3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=823720 QHF92_RS08890 WP_003238551.1 1794847..1795626(+) (codY) [Bacillus inaquosorum strain M3]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCAGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAATAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACCCTCATTCTTTCACGTTTACAGGATC
AATTTCATGATGATGATTTAATTCTCGCTGAATACGGCGCTACAGTTGTCGGCATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GCTCTGTGATTGTTAATGCACTCAGAAAGCTGGAAAGCGCCGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467