Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QH639_RS10575 Genome accession   NZ_CP123966
Coordinates   2079120..2081552 (-) Length   810 a.a.
NCBI ID   WP_237898286.1    Uniprot ID   -
Organism   Lysinibacillus sp.     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2074120..2086552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QH639_RS10565 (QH639_10565) corA 2076128..2077093 (-) 966 WP_131520515.1 magnesium/cobalt transporter CorA -
  QH639_RS10570 (QH639_10570) hpaB 2077563..2078996 (-) 1434 WP_281116036.1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component -
  QH639_RS10575 (QH639_10575) recD2 2079120..2081552 (-) 2433 WP_237898286.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QH639_RS10580 (QH639_10580) hisA 2081742..2082509 (+) 768 WP_237898287.1 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase -
  QH639_RS10585 (QH639_10585) - 2082506..2082793 (+) 288 WP_048392136.1 hypothetical protein -
  QH639_RS10590 (QH639_10590) - 2082926..2083804 (+) 879 WP_237898288.1 hypothetical protein -
  QH639_RS10595 (QH639_10595) - 2083794..2084543 (+) 750 WP_237898289.1 GTP pyrophosphokinase family protein -
  QH639_RS10600 (QH639_10600) - 2084632..2086077 (-) 1446 WP_237898290.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 810 a.a.        Molecular weight: 90679.03 Da        Isoelectric Point: 4.8064

>NTDB_id=823323 QH639_RS10575 WP_237898286.1 2079120..2081552(-) (recD2) [Lysinibacillus sp.]
MTDHLDLFELNKFFILGRPIVSIFHNAQNMYSIVRVKIQETNLQYEDKEIIVVGYFPPLQMDEQYRFTGILKQHPKYGAQ
FQIETFTKEVPATEQGIIHYLSSDLFVGIGKKTAETIVEKLGANALRVILEDPSALDAVPRLSAEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTEAIELLTENPYRLIEDVEGVGFFRADELGAKLGITGKHPDRVKAAILHILNTAA
LSDGHVYLDAEHVLPLVKEMLEQSQRQEIPFEDISQACIGLREEGKICGEETRLYLPSLYFSEVGIASKILSLIERNNKA
EHFSKDEIRKAIGETEELLNVTYAETQANAIEQALNSAVMILTGGPGTGKTTVVRGVVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQLPTVELTDVYRQAEGSTIIELAHQIKKGTIPQELTAKTSDRSFIKASADQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQELINPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLIVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLADGLQRTDDLQRFTSLRARLNPMEIEEELVEVEAVPVENEGMQEPVSIEPKLTVETAPYIHPMIGMN
DVSPYDFLDD

Nucleotide


Download         Length: 2433 bp        

>NTDB_id=823323 QH639_RS10575 WP_237898286.1 2079120..2081552(-) (recD2) [Lysinibacillus sp.]
ATGACAGATCATTTAGATTTATTTGAACTCAATAAATTTTTTATACTCGGACGTCCGATCGTCTCTATCTTTCATAATGC
GCAAAATATGTATTCGATTGTACGTGTGAAAATTCAAGAGACGAATTTGCAATATGAAGATAAAGAGATTATTGTTGTAG
GTTATTTTCCCCCACTACAAATGGATGAACAATATCGATTTACTGGTATTTTAAAACAGCATCCTAAATACGGCGCTCAA
TTTCAAATTGAGACATTTACAAAAGAGGTACCAGCAACCGAGCAAGGAATTATTCATTATTTATCTAGTGATCTCTTTGT
AGGGATCGGGAAAAAAACAGCTGAAACGATTGTTGAAAAACTAGGTGCTAATGCACTCCGTGTTATTTTAGAAGATCCCA
GTGCCCTCGATGCTGTTCCACGTCTATCTGCTGAAAAAAAAGAAGTCATTCACCGCACCATTGAGCAAAACTTAGGCTTA
GAGCGGGTCATGATTCAATTGAATGAGTGGGGATTTGGTCCACAGCTTGGGATGAAAATTTACCAAACCTATCGAACAGA
AGCCATTGAATTACTGACAGAAAATCCATACCGCTTAATTGAAGATGTGGAAGGGGTAGGTTTCTTTCGAGCTGACGAGC
TAGGTGCGAAATTGGGTATAACTGGTAAACACCCTGATCGTGTCAAAGCAGCGATTTTACATATTTTAAATACAGCAGCT
TTATCGGATGGACATGTCTATCTAGACGCAGAACATGTTTTACCGCTCGTTAAGGAAATGCTTGAACAAAGCCAACGACA
GGAGATACCATTCGAGGATATTTCTCAAGCCTGTATCGGTCTCCGTGAAGAAGGCAAAATTTGTGGTGAAGAGACAAGGT
TATATTTACCGTCACTCTATTTTTCAGAGGTAGGGATTGCATCGAAAATCTTATCGCTTATCGAGCGAAATAATAAGGCT
GAACATTTTAGTAAAGATGAAATTCGAAAAGCCATTGGAGAAACAGAGGAGCTACTCAATGTTACCTATGCAGAAACACA
AGCGAATGCCATCGAACAGGCTTTAAATTCAGCTGTTATGATTTTAACGGGTGGTCCTGGTACGGGGAAAACCACTGTTG
TACGGGGAGTTGTGGAAGTTTATGCAAAGCTTCATGGCTTATCCTTAAATCCAAAAGAGTATGCTCAAAAAGAGGAGCCT
TTTCCGATTATTCTTTGTGCACCAACTGGACGTGCTGCTAAACGATTAGCCGAATCAACAGAGCTTCCTGCGATGACCAT
TCATCGACTGCTCGGTTTTACAGGGCAAGAAAAAGAGGAAGAAACAGAGCGTGAAGTGACAGGTAAGTTGATTATCGTGG
ATGAAATGTCCATGGTTGATACATGGCTTGCCCATCAATTATTAAAGGCTTTACATGAAGATGTTCAAGTTGTCTTTGTT
GGAGATCAGGATCAGCTTCCACCAGTAGGTCCAGGACAGGTGTTAAAGGATCTATTAGCATCCAAGCAGCTACCAACTGT
CGAGCTAACAGATGTTTACCGACAAGCAGAAGGCTCGACGATTATTGAACTTGCCCATCAAATAAAAAAAGGAACGATTC
CACAAGAGTTAACAGCTAAAACCTCTGATCGTTCGTTTATAAAGGCTTCAGCCGATCAAGTTGCCAACGTTGTTACACAG
GTTGTCAAAAGTGCTGTCGCAAAGGGCCAGGAAATCCGTAATATTCAAGTGTTGGCGCCCATGTATAAAGGACCAGCTGG
GATAGATAATTTAAATAAAATGATTCAGGAGCTAATTAACCCAAATGATACTGGCACACGAAAAGAGCTAGTTTTTGGGG
ATGTCACCTATCGAATAAAGGATAAAGTGCTTCAGCTTGTCAATCAACCTGAAAGCAATGTCTTTAATGGAGATATGGGT
GAGGTCATTAGTATTATTAAAGCGAAAGAGACGGTCGAAAAACAAGATTTACTGATCGTATCCTTTGATGGCATTGAGGT
GACCTATCAACGAAGTGATCTCAATCAATTGACACTAGCTTATTGTTGCTCCATCCATAAATCACAGGGCTCTGAGTTTC
AAACGGTCATTATGCCAGTGGTTAGAGGGTATTCCAAAATGTTACGGCGTAACCTTTTATACACAGGTATTACACGTGCT
AAAAACTTTTTGATTTTATGTGGTGAACCAGATGTGCTTGCGGATGGTTTACAGCGTACAGATGACCTTCAGCGTTTCAC
CTCTTTACGTGCAAGACTTAACCCAATGGAAATTGAGGAAGAACTTGTGGAAGTCGAGGCAGTGCCAGTAGAAAATGAAG
GGATGCAGGAGCCGGTTTCCATTGAACCAAAGCTAACAGTAGAAACAGCCCCTTATATTCATCCAATGATTGGTATGAAT
GATGTCTCTCCATATGATTTTTTGGATGACTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

AAA domain (AAA_30)

(343-550)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

52.457

100

0.527