Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   QG728_RS00480 Genome accession   NZ_CP123854
Coordinates   102583..103284 (-) Length   233 a.a.
NCBI ID   WP_000594584.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WB4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 97583..108284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG728_RS00450 (QG728_00450) - 97890..98333 (-) 444 WP_001246675.1 SRPBCC family protein -
  QG728_RS00455 (QG728_00455) tadA 98403..98906 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  QG728_RS00460 (QG728_00460) - 98913..100037 (-) 1125 WP_100229083.1 enoyl-CoA hydratase/isomerase family protein -
  QG728_RS00465 (QG728_00465) ung 100034..100747 (-) 714 WP_001177530.1 uracil-DNA glycosylase -
  QG728_RS00470 (QG728_00470) - 100798..101394 (-) 597 WP_000908453.1 6-carboxytetrahydropterin synthase -
  QG728_RS00475 (QG728_00475) gspK 101624..102583 (-) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  QG728_RS00480 (QG728_00480) xcpW 102583..103284 (-) 702 WP_000594584.1 type II secretion system minor pseudopilin GspJ Machinery gene
  QG728_RS00485 (QG728_00485) xcpV 103284..103664 (-) 381 WP_000836915.1 type II secretion system minor pseudopilin GspI Machinery gene
  QG728_RS00490 (QG728_00490) - 103654..104208 (-) 555 WP_000841373.1 type II secretion system protein -
  QG728_RS00495 (QG728_00495) - 104218..104826 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  QG728_RS00500 (QG728_00500) - 104864..105637 (-) 774 WP_000497298.1 TatD family hydrolase -
  QG728_RS00505 (QG728_00505) - 105655..105996 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  QG728_RS00510 (QG728_00510) - 106008..106988 (-) 981 WP_025467814.1 DNA polymerase III subunit delta' -
  QG728_RS00515 (QG728_00515) kdsB 107000..107761 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26622.59 Da        Isoelectric Point: 9.5501

>NTDB_id=822820 QG728_RS00480 WP_000594584.1 102583..103284(-) (xcpW) [Acinetobacter baumannii strain WB4]
MIKNKYIHIRSIASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLNQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=822820 QG728_RS00480 WP_000594584.1 102583..103284(-) (xcpW) [Acinetobacter baumannii strain WB4]
ATGATAAAAAATAAATATATTCATATCCGAAGCATTGCTTCTCGTCTTGCGGCGCGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAGTTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAATCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.571

100

0.996