Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R6U48_RS09285 Genome accession   NZ_CP137562
Coordinates   1993595..1994020 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain CPA0087     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1988595..1999020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U48_RS09265 (R6U48_09265) ileS 1988752..1991583 (+) 2832 WP_031631915.1 isoleucine--tRNA ligase -
  R6U48_RS09270 (R6U48_09270) lspA 1991576..1992085 (+) 510 WP_003102615.1 signal peptidase II -
  R6U48_RS09275 (R6U48_09275) fkpB 1992078..1992518 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  R6U48_RS09280 (R6U48_09280) ispH 1992604..1993548 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R6U48_RS09285 (R6U48_09285) comF 1993595..1994020 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  R6U48_RS09290 (R6U48_09290) pilY2 1994017..1994364 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  R6U48_RS09295 (R6U48_09295) pilY1 1994366..1997851 (-) 3486 WP_031631913.1 type 4a pilus biogenesis protein PilY1 -
  R6U48_RS09300 (R6U48_09300) pilX 1997863..1998450 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=822564 R6U48_RS09285 WP_003094721.1 1993595..1994020(-) (comF) [Pseudomonas aeruginosa strain CPA0087]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=822564 R6U48_RS09285 WP_003094721.1 1993595..1994020(-) (comF) [Pseudomonas aeruginosa strain CPA0087]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383