Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R6U47_RS29975 Genome accession   NZ_CP137561
Coordinates   6406226..6406651 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain CPA0053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6401226..6411651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U47_RS29955 (R6U47_29955) ileS 6401383..6404214 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  R6U47_RS29960 (R6U47_29960) lspA 6404207..6404716 (+) 510 WP_003102615.1 signal peptidase II -
  R6U47_RS29965 (R6U47_29965) fkpB 6404709..6405149 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  R6U47_RS29970 (R6U47_29970) ispH 6405235..6406179 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R6U47_RS29975 (R6U47_29975) comF 6406226..6406651 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  R6U47_RS29980 (R6U47_29980) pilY2 6406648..6406995 (-) 348 WP_012614546.1 type 4a fimbrial biogenesis protein PilY2 -
  R6U47_RS29985 (R6U47_29985) pilY1 6406997..6410488 (-) 3492 WP_324001818.1 type 4a pilus biogenesis protein PilY1 -
  R6U47_RS29990 (R6U47_29990) pilX 6410500..6411087 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=822508 R6U47_RS29975 WP_003094721.1 6406226..6406651(-) (comF) [Pseudomonas aeruginosa strain CPA0053]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=822508 R6U47_RS29975 WP_003094721.1 6406226..6406651(-) (comF) [Pseudomonas aeruginosa strain CPA0053]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383