Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R2B38_RS42985 Genome accession   NZ_CP137549
Coordinates   9689616..9690452 (-) Length   278 a.a.
NCBI ID   WP_318021233.1    Uniprot ID   -
Organism   Streptomyces sp. N50     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 9684616..9695452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B38_RS42965 (R2B38_42965) - 9684642..9685412 (-) 771 WP_318021229.1 alpha/beta hydrolase -
  R2B38_RS42970 (R2B38_42970) - 9685414..9686448 (-) 1035 WP_318021230.1 LLM class flavin-dependent oxidoreductase -
  R2B38_RS42975 (R2B38_42975) - 9686470..9688206 (-) 1737 WP_318021231.1 FAD-dependent monooxygenase -
  R2B38_RS42980 (R2B38_42980) - 9688217..9689557 (-) 1341 WP_318021232.1 LLM class flavin-dependent oxidoreductase -
  R2B38_RS42985 (R2B38_42985) amiE 9689616..9690452 (-) 837 WP_318021233.1 ABC transporter ATP-binding protein Regulator
  R2B38_RS42990 (R2B38_42990) - 9690449..9691363 (-) 915 WP_318021234.1 ABC transporter ATP-binding protein -
  R2B38_RS42995 (R2B38_42995) - 9691363..9692262 (-) 900 WP_318021235.1 ABC transporter permease -
  R2B38_RS43000 (R2B38_43000) - 9692265..9693296 (-) 1032 WP_318021236.1 ABC transporter permease -
  R2B38_RS43005 (R2B38_43005) - 9693369..9694928 (-) 1560 WP_318021237.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 278 a.a.        Molecular weight: 30215.50 Da        Isoelectric Point: 9.5464

>NTDB_id=822309 R2B38_RS42985 WP_318021233.1 9689616..9690452(-) (amiE) [Streptomyces sp. N50]
MSTEHTAPVLEVTDLDVHFGLRRRRRQALNRVSLSIAPGETVGIIGETGSGKSTLARTVLGLVRASSGSIVIDGEEVSAY
GHRQWRALRRRGVIQYVFQDPLRSLDPDVTVEASLAEPLLIQGVSRQEAATRVRAFLDRVRLSAELLDRLPGELSGGQRQ
RVAVARALVTEPRHVILDEPVSALDSANRVQILQILKELRADGVALVFISHDLGSVAGVADRIAVLYQGELVEAGATADV
INQPRHPYTRLLVRSAPTLHSAAADRAEREALRALLHA

Nucleotide


Download         Length: 837 bp        

>NTDB_id=822309 R2B38_RS42985 WP_318021233.1 9689616..9690452(-) (amiE) [Streptomyces sp. N50]
ATGAGCACCGAGCACACCGCCCCTGTCCTTGAGGTCACCGACCTGGACGTGCACTTCGGCCTCCGCCGGCGCCGCCGCCA
GGCCCTGAACCGGGTCTCCCTGAGCATCGCCCCGGGCGAGACCGTCGGCATCATCGGCGAGACCGGCTCCGGCAAGTCGA
CGCTCGCGCGGACCGTACTCGGCCTGGTGCGCGCCTCGTCCGGGTCGATCGTGATCGACGGCGAGGAGGTGAGCGCCTAC
GGCCATCGGCAGTGGCGTGCGCTGCGGCGCCGGGGCGTGATCCAGTACGTCTTCCAGGACCCGCTGCGCAGTCTCGACCC
GGACGTGACGGTCGAGGCGTCCCTGGCCGAACCCCTGCTCATCCAGGGCGTGTCCAGGCAGGAGGCGGCGACCCGAGTGC
GCGCCTTTCTCGACCGGGTACGACTCTCCGCCGAGCTGCTCGACCGGCTGCCGGGCGAGTTGTCCGGCGGTCAGCGTCAA
CGGGTCGCGGTGGCACGGGCGTTGGTGACCGAGCCGCGGCACGTCATCCTGGACGAGCCGGTCAGCGCGCTCGACTCCGC
CAACCGCGTGCAGATCCTCCAGATCCTCAAGGAACTCCGCGCCGACGGGGTCGCCCTCGTCTTCATCTCCCACGACCTCG
GGTCCGTCGCCGGGGTCGCCGACCGCATCGCCGTGCTGTACCAGGGCGAGTTGGTCGAGGCCGGCGCCACCGCCGACGTC
ATCAACCAGCCCCGACACCCGTACACGCGCCTGCTCGTCCGCTCCGCACCCACTCTGCACAGCGCTGCGGCGGACCGGGC
CGAACGCGAGGCCCTGCGCGCCCTCCTGCACGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(29-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(232-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

37.455

98.921

0.371
  amiF Streptococcus thermophilus LMG 18311

40.711

91.007

0.37
  amiF Streptococcus thermophilus LMD-9

40.316

91.007

0.367
  amiF Streptococcus salivarius strain HSISS4

39.921

91.007

0.363