Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R2B38_RS05255 Genome accession   NZ_CP137549
Coordinates   1270179..1271534 (-) Length   451 a.a.
NCBI ID   WP_033282275.1    Uniprot ID   -
Organism   Streptomyces sp. N50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1265179..1276534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B38_RS05235 (R2B38_05235) - 1266029..1266388 (-) 360 WP_318015178.1 hypothetical protein -
  R2B38_RS05240 (R2B38_05240) - 1266396..1266842 (-) 447 WP_063744453.1 DUF948 domain-containing protein -
  R2B38_RS05245 (R2B38_05245) - 1267049..1269217 (+) 2169 WP_318015179.1 ATP-binding protein -
  R2B38_RS05250 (R2B38_05250) rpsD 1269251..1269865 (-) 615 WP_019066381.1 30S ribosomal protein S4 -
  R2B38_RS05255 (R2B38_05255) rarA 1270179..1271534 (-) 1356 WP_033282275.1 replication-associated recombination protein A Machinery gene
  R2B38_RS05260 (R2B38_05260) - 1271804..1272460 (-) 657 WP_033282274.1 vitamin K epoxide reductase family protein -
  R2B38_RS05265 (R2B38_05265) - 1272603..1273469 (+) 867 WP_318015180.1 ABC transporter ATP-binding protein -
  R2B38_RS05270 (R2B38_05270) - 1273466..1274323 (+) 858 WP_318015181.1 ABC transporter permease -
  R2B38_RS05275 (R2B38_05275) - 1274320..1275573 (+) 1254 WP_318015182.1 sensor histidine kinase -
  R2B38_RS05280 (R2B38_05280) vraR 1275570..1276193 (+) 624 WP_318015183.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48593.01 Da        Isoelectric Point: 6.2032

>NTDB_id=822230 R2B38_RS05255 WP_033282275.1 1270179..1271534(-) (rarA) [Streptomyces sp. N50]
MEPDLFTAAAEERQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWITLIAATTENPYF
SVISPLLSRSLLLTLEPLTDEDLRALLRRASSDERGLKDAVTLPEDSENHLLRIAGGDARRALTALEAAAGAALDKGEPD
ITLQTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATNAIGAAMEDVRKGHAGPVPMHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAEQQYAPEELKDREYYEPTRHGAEARYADAVEWTRKHLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=822230 R2B38_RS05255 WP_033282275.1 1270179..1271534(-) (rarA) [Streptomyces sp. N50]
GTGGAGCCCGACCTATTCACCGCCGCCGCGGAAGAACGCCAGGAGAAGGACCCGTCCAGCAGTCCCCTGGCGGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTCGTGGGCCAGCAGCACCTGCTGAAGCCGGGCTCGCCCTTGCGCCGGTTGGTCGGTG
AGGGGGCGGGCGGCCCGGCCGGACCGTCCTCGGTGATCCTCTGGGGGCCGCCCGGCACCGGCAAGACGACCCTCGCGTAC
GTCGTCTCCAAGGCGACGAACAAGCGGTTCGTCGAGCTGTCCGCGATCACCGCCGGGGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCAACCGGAGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTCCTCCCGGCCGTCGAGAACCGCTGGATCACCCTGATCGCGGCGACCACGGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTCCTGTCCCGCTCCCTCCTCCTCACCCTCGAACCCCTCACGGACGAGGACCTGCGCGCCCTGCT
CCGCCGGGCCTCGAGCGACGAGCGCGGTCTGAAGGACGCGGTCACGCTCCCCGAGGACAGTGAGAACCACCTGCTGCGCA
TCGCCGGTGGTGACGCCCGCCGCGCGCTGACCGCCCTGGAGGCCGCCGCCGGGGCCGCCCTCGACAAGGGCGAGCCGGAC
ATCACCCTCCAGACCCTGGAGGAGACGGTCGACCGTGCGGCGGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGCGCCCTCATCAAGTCCATCCGGGGTTCGGACGTCGACGCGGCCCTGCACTACCTCGCCCGCATGATCGAGGCTG
GCGAGGACCCCCGCTTCATCGCCCGCCGCCTGATGATCTCCGCCAGCGAGGACATCGGCCTGGCCGATCCGAACGCCCTG
CCGATCGCGGTCGCCGCCGCCCAGGCCGTAGCGATGATCGGGTTCCCGGAGGCCGCGCTCACCCTCAGCCACGCCACCAT
CGCGCTCGCCCTCGCGCCCAAGTCGAACGCGGCGACCAACGCGATCGGCGCCGCCATGGAGGACGTACGCAAGGGGCACG
CGGGCCCAGTGCCCATGCATCTGCGGGACGGGCACTACAAGGGCGCGGCCAAGCTCGGTCACGCCCAGGGGTACGTCTAC
CCGCACGACCTGCCCGAGGGGATCGCCGAGCAGCAGTACGCCCCGGAGGAGCTGAAGGACCGCGAGTACTACGAGCCGAC
CCGGCACGGTGCCGAGGCACGATACGCGGACGCCGTGGAGTGGACCAGAAAACACCTTGGTCGTAAGCGGTCCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(199-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.111

96.009

0.424