Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QFX62_RS06010 Genome accession   NZ_CP123744
Coordinates   1175204..1176274 (+) Length   356 a.a.
NCBI ID   WP_000775708.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1170204..1181274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX62_RS05980 - 1170627..1172090 (+) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  QFX62_RS05985 - 1172071..1172274 (+) 204 WP_000087561.1 YqgQ family protein -
  QFX62_RS05990 - 1172271..1173257 (+) 987 WP_000161314.1 ROK family glucokinase -
  QFX62_RS05995 - 1173257..1173586 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QFX62_RS06000 - 1173583..1174206 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX62_RS06005 comGA 1174258..1175232 (+) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX62_RS06010 comGB 1175204..1176274 (+) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX62_RS06015 comGC 1176288..1176599 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX62_RS06020 comGD 1176577..1177023 (+) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX62_RS06025 comGE 1177010..1177309 (+) 300 WP_304984667.1 competence protein ComGE Machinery gene
  QFX62_RS06030 comGF 1177227..1177724 (+) 498 WP_304984668.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX62_RS06035 - 1177821..1177967 (+) 147 WP_001789879.1 hypothetical protein -
  QFX62_RS06040 - 1177957..1178481 (+) 525 WP_001015117.1 shikimate kinase -
  QFX62_RS06045 gcvT 1178640..1179731 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX62_RS06050 gcvPA 1179751..1181097 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41364.77 Da        Isoelectric Point: 10.0092

>NTDB_id=822218 QFX62_RS06010 WP_000775708.1 1175204..1176274(+) (comGB) [Staphylococcus aureus strain 1.8]
MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=822218 QFX62_RS06010 WP_000775708.1 1175204..1176274(+) (comGB) [Staphylococcus aureus strain 1.8]
GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997