Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R9C51_RS08745 Genome accession   NZ_AP026921
Coordinates   1705687..1706958 (+) Length   423 a.a.
NCBI ID   WP_050232555.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1700687..1711958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9C51_RS08710 (PC0027_17310) - 1701749..1702177 (-) 429 WP_000402002.1 NUDIX hydrolase -
  R9C51_RS08715 (PC0027_17320) - 1702179..1703246 (-) 1068 WP_180384335.1 site-2 protease family protein -
  R9C51_RS08720 (PC0027_17330) - 1703265..1703735 (-) 471 WP_000257104.1 DUF3013 family protein -
  R9C51_RS08725 (PC0027_17340) - 1704026..1704478 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R9C51_RS08730 (PC0027_17350) - 1704515..1704694 (-) 180 WP_001132282.1 type II toxin-antitoxin system HicA family toxin -
  R9C51_RS08735 (PC0027_17360) - 1704831..1705010 (-) 180 WP_001048906.1 hypothetical protein -
  R9C51_RS08740 (PC0027_17370) - 1705175..1705417 (-) 243 WP_050232554.1 hypothetical protein -
  R9C51_RS08745 (PC0027_17380) rarA 1705687..1706958 (+) 1272 WP_050232555.1 replication-associated recombination protein A Machinery gene
  R9C51_RS08755 (PC0027_17390) - 1707505..1708824 (-) 1320 WP_000502555.1 glycoside hydrolase family 32 protein -
  R9C51_RS08760 (PC0027_17400) - 1708834..1710450 (-) 1617 WP_000669743.1 ABC transporter substrate-binding protein -
  R9C51_RS08765 (PC0027_17410) - 1710479..1711369 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46978.44 Da        Isoelectric Point: 5.9140

>NTDB_id=82220 R9C51_RS08745 WP_050232555.1 1705687..1706958(+) (rarA) [Streptococcus pneumoniae strain PZ900700027]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALVQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=82220 R9C51_RS08745 WP_050232555.1 1705687..1706958(+) (rarA) [Streptococcus pneumoniae strain PZ900700027]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTAAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGTTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.191

96.69

0.563

Multiple sequence alignment