Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OU418_RS16890 Genome accession   NZ_CP123621
Coordinates   3211225..3211869 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain RLI2019     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3206225..3216869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS16855 (OU418_16855) mrpB 3207417..3207848 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  OU418_RS16860 (OU418_16860) mrpC 3207848..3208189 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  OU418_RS16865 (OU418_16865) mrpD 3208182..3209663 (+) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  OU418_RS16870 (OU418_16870) mrpE 3209669..3210145 (+) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  OU418_RS16875 (OU418_16875) mrpF 3210145..3210429 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  OU418_RS16880 (OU418_16880) mnhG 3210413..3210787 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  OU418_RS16885 (OU418_16885) yuxO 3210826..3211206 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  OU418_RS16890 (OU418_16890) comA 3211225..3211869 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  OU418_RS16895 (OU418_16895) comP 3211950..3214250 (-) 2301 WP_088300729.1 histidine kinase Regulator
  OU418_RS16900 (OU418_16900) comX 3214262..3214426 (-) 165 WP_015384519.1 competence pheromone ComX -
  OU418_RS16905 (OU418_16905) - 3214439..3215299 (-) 861 WP_041850585.1 polyprenyl synthetase family protein -
  OU418_RS16910 (OU418_16910) degQ 3215483..3215623 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  OU418_RS16915 (OU418_16915) - 3215845..3215907 (+) 63 Protein_3275 hypothetical protein -
  OU418_RS16920 (OU418_16920) - 3216086..3216454 (+) 369 WP_041850584.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=821784 OU418_RS16890 WP_003220716.1 3211225..3211869(-) (comA) [Bacillus subtilis strain RLI2019]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=821784 OU418_RS16890 WP_003220716.1 3211225..3211869(-) (comA) [Bacillus subtilis strain RLI2019]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1