Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   R5024_RS28250 Genome accession   NZ_CP137510
Coordinates   6043751..6044275 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain HPA0310     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6038751..6049275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5024_RS28235 (R5024_28235) aroB 6039867..6040973 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  R5024_RS28240 (R5024_28240) aroK 6041023..6041541 (-) 519 WP_003095833.1 shikimate kinase AroK -
  R5024_RS28245 (R5024_28245) pilQ 6041553..6043697 (-) 2145 WP_012614629.1 type 4a pilus secretin PilQ Machinery gene
  R5024_RS28250 (R5024_28250) comL/pilP 6043751..6044275 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  R5024_RS28255 (R5024_28255) pilO 6044272..6044895 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  R5024_RS28260 (R5024_28260) pilN 6044892..6045488 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  R5024_RS28265 (R5024_28265) pilM 6045488..6046552 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  R5024_RS28270 (R5024_28270) - 6046737..6049205 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=821700 R5024_RS28250 WP_003095836.1 6043751..6044275(-) (comL/pilP) [Pseudomonas aeruginosa strain HPA0310]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=821700 R5024_RS28250 WP_003095836.1 6043751..6044275(-) (comL/pilP) [Pseudomonas aeruginosa strain HPA0310]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGGGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362