Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QFC96_RS08535 Genome accession   NZ_CP123581
Coordinates   1619469..1620026 (-) Length   185 a.a.
NCBI ID   WP_223315565.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain ZHA1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1614469..1625026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFC96_RS08510 (QFC96_08510) - 1614785..1615417 (+) 633 WP_004265005.1 type II CAAX endopeptidase family protein -
  QFC96_RS08515 (QFC96_08515) - 1615470..1616117 (-) 648 WP_004265080.1 redox-sensing transcriptional repressor Rex -
  QFC96_RS08520 (QFC96_08520) - 1616313..1618256 (+) 1944 WP_136903963.1 ABC-F family ATP-binding cassette domain-containing protein -
  QFC96_RS08525 (QFC96_08525) - 1618407..1618766 (-) 360 WP_004265057.1 YccF domain-containing protein -
  QFC96_RS08530 (QFC96_08530) - 1618873..1619190 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  QFC96_RS08535 (QFC96_08535) sigH 1619469..1620026 (-) 558 WP_223315565.1 sigma-70 family RNA polymerase sigma factor Regulator
  QFC96_RS08540 (QFC96_08540) - 1620102..1620635 (-) 534 WP_004265051.1 NYN domain-containing protein -
  QFC96_RS08545 (QFC96_08545) rlmB 1620639..1621526 (-) 888 WP_080752752.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QFC96_RS08550 (QFC96_08550) - 1621513..1621920 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  QFC96_RS08555 (QFC96_08555) cysS 1621917..1623323 (-) 1407 WP_065825219.1 cysteine--tRNA ligase -
  QFC96_RS08560 (QFC96_08560) - 1623865..1624977 (-) 1113 WP_004265009.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21779.02 Da        Isoelectric Point: 6.6648

>NTDB_id=821390 QFC96_RS08535 WP_223315565.1 1619469..1620026(-) (sigH) [Latilactobacillus curvatus strain ZHA1]
MELAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=821390 QFC96_RS08535 WP_223315565.1 1619469..1620026(-) (sigH) [Latilactobacillus curvatus strain ZHA1]
ATGGAATTAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTCGTCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719