Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QFC96_RS07665 Genome accession   NZ_CP123581
Coordinates   1465675..1466205 (-) Length   176 a.a.
NCBI ID   WP_155275694.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain ZHA1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1460675..1471205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFC96_RS07655 (QFC96_07655) secA 1462412..1464775 (-) 2364 WP_004270228.1 preprotein translocase subunit SecA -
  QFC96_RS07660 (QFC96_07660) raiA 1465004..1465549 (-) 546 WP_004270226.1 ribosome-associated translation inhibitor RaiA -
  QFC96_RS07665 (QFC96_07665) comFC 1465675..1466205 (-) 531 WP_155275694.1 ComF family protein Machinery gene
  QFC96_RS07670 (QFC96_07670) comFA 1466349..1467683 (-) 1335 WP_100069772.1 DEAD/DEAH box helicase Machinery gene
  QFC96_RS07675 (QFC96_07675) - 1467740..1468402 (+) 663 WP_004270231.1 YigZ family protein -
  QFC96_RS07680 (QFC96_07680) - 1468427..1469515 (-) 1089 WP_004270225.1 MraY family glycosyltransferase -
  QFC96_RS07685 (QFC96_07685) hemH 1469625..1470576 (-) 952 Protein_1495 ferrochelatase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 20695.83 Da        Isoelectric Point: 9.7337

>NTDB_id=821385 QFC96_RS07665 WP_155275694.1 1465675..1466205(-) (comFC) [Latilactobacillus curvatus strain ZHA1]
MTTQGVCPDCQRWQQLYPGEQFTNRALLTYNEPMQQYFQRYKGQGDYRLRHVFQRLIRENFPVQRQTAYIPVPTDPTHLQ
SRGFNPVVGLYEDCFPLTPLLQKLPTEKGQAQKNRAERLATPQFFKCAQNMLLGSKVQQLILLDDIYTTGRTLWHAQQCL
RKRYQTLPIHAITLVH

Nucleotide


Download         Length: 531 bp        

>NTDB_id=821385 QFC96_RS07665 WP_155275694.1 1465675..1466205(-) (comFC) [Latilactobacillus curvatus strain ZHA1]
ATGACAACCCAGGGGGTGTGTCCGGATTGCCAGAGATGGCAGCAACTGTATCCAGGCGAACAATTTACTAATCGAGCGTT
GTTAACATACAACGAACCAATGCAACAGTATTTTCAACGCTATAAGGGGCAGGGGGATTATCGATTACGTCACGTATTTC
AACGGCTGATTCGAGAAAATTTTCCTGTGCAACGGCAAACGGCGTATATCCCAGTCCCGACTGATCCAACACATTTGCAA
AGCCGCGGATTCAATCCGGTGGTTGGCTTATACGAGGACTGTTTTCCACTGACCCCATTGTTGCAGAAGCTACCAACTGA
AAAAGGACAAGCACAAAAAAATCGTGCAGAGCGCTTAGCAACGCCGCAATTTTTTAAATGCGCGCAGAACATGCTGTTGG
GTTCCAAGGTGCAGCAGTTAATTTTGTTGGATGATATTTATACCACTGGGCGCACGTTATGGCATGCTCAGCAGTGTCTC
CGCAAGCGATACCAAACGCTGCCAATTCACGCAATTACTTTAGTCCACTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

65.493

80.682

0.528