Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R5017_RS24875 Genome accession   NZ_CP137498
Coordinates   5246774..5247499 (+) Length   241 a.a.
NCBI ID   WP_031686344.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA0663     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5241774..5252499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5017_RS24845 (R5017_24845) - 5241894..5242772 (-) 879 WP_023100156.1 5-oxoprolinase subunit B family protein -
  R5017_RS24850 (R5017_24850) - 5242774..5244150 (-) 1377 WP_023092334.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  R5017_RS24855 (R5017_24855) - 5244161..5244409 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  R5017_RS24860 (R5017_24860) - 5244486..5245244 (-) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  R5017_RS24865 (R5017_24865) - 5245362..5246288 (+) 927 WP_003129068.1 LysR family transcriptional regulator -
  R5017_RS24870 (R5017_24870) - 5246342..5246635 (+) 294 WP_003084806.1 hypothetical protein -
  R5017_RS24875 (R5017_24875) comF 5246774..5247499 (+) 726 WP_031686344.1 ComF family protein Machinery gene
  R5017_RS24880 (R5017_24880) - 5247541..5247861 (+) 321 WP_031686343.1 YfiM family lipoprotein -
  R5017_RS24885 (R5017_24885) - 5247929..5248687 (+) 759 WP_003084796.1 TOBE domain-containing protein -
  R5017_RS24890 (R5017_24890) - 5248749..5249723 (+) 975 WP_003084794.1 serine/threonine protein kinase -
  R5017_RS24895 (R5017_24895) rarD 5249926..5250822 (+) 897 WP_003103301.1 EamA family transporter RarD -
  R5017_RS24900 (R5017_24900) - 5251512..5252027 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26980.47 Da        Isoelectric Point: 10.5596

>NTDB_id=821187 R5017_RS24875 WP_031686344.1 5246774..5247499(+) (comF) [Pseudomonas aeruginosa strain HPA0663]
MSFPLRPLTRWLLPPPACLLCAACSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRSDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLTRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=821187 R5017_RS24875 WP_031686344.1 5246774..5247499(+) (comF) [Pseudomonas aeruginosa strain HPA0663]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCTGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCAGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACGCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTACCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382