Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   R5026_RS02655 Genome accession   NZ_CP137495
Coordinates   588182..588778 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain HPA0875     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 583182..593778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5026_RS02635 (R5026_02635) aroK 584313..584831 (-) 519 WP_003095833.1 shikimate kinase AroK -
  R5026_RS02640 (R5026_02640) pilQ 584843..586987 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  R5026_RS02645 (R5026_02645) pilP 587041..587565 (-) 525 WP_317938312.1 type 4a pilus biogenesis lipoprotein PilP -
  R5026_RS02650 (R5026_02650) pilO 587562..588185 (-) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  R5026_RS02655 (R5026_02655) pilN 588182..588778 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  R5026_RS02660 (R5026_02660) pilM 588778..589842 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  R5026_RS02665 (R5026_02665) - 590027..592498 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=821038 R5026_RS02655 WP_003095839.1 588182..588778(-) (pilN) [Pseudomonas aeruginosa strain HPA0875]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=821038 R5026_RS02655 WP_003095839.1 588182..588778(-) (pilN) [Pseudomonas aeruginosa strain HPA0875]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGATTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369