Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R5018_RS10410 Genome accession   NZ_CP137491
Coordinates   2162638..2163063 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain HPA1406     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2157638..2168063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5018_RS10390 (R5018_10390) ileS 2157795..2160626 (+) 2832 WP_003094730.1 isoleucine--tRNA ligase -
  R5018_RS10395 (R5018_10395) lspA 2160619..2161128 (+) 510 WP_003094728.1 signal peptidase II -
  R5018_RS10400 (R5018_10400) fkpB 2161121..2161561 (+) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  R5018_RS10405 (R5018_10405) ispH 2161647..2162591 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  R5018_RS10410 (R5018_10410) comF 2162638..2163063 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  R5018_RS10415 (R5018_10415) pilY2 2163060..2163407 (-) 348 WP_003094713.1 type 4a fimbrial biogenesis protein PilY2 -
  R5018_RS10420 (R5018_10420) pilY1 2163409..2166900 (-) 3492 WP_003094704.1 type 4a pilus biogenesis protein PilY1 -
  R5018_RS10425 (R5018_10425) pilX 2166912..2167499 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=820870 R5018_RS10410 WP_003094721.1 2162638..2163063(-) (comF) [Pseudomonas aeruginosa strain HPA1406]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=820870 R5018_RS10410 WP_003094721.1 2162638..2163063(-) (comF) [Pseudomonas aeruginosa strain HPA1406]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383