Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   R5018_RS04280 Genome accession   NZ_CP137491
Coordinates   908636..909361 (-) Length   241 a.a.
NCBI ID   WP_014604095.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA1406     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 903636..914361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5018_RS04255 (R5018_04255) - 904108..904623 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  R5018_RS04260 (R5018_04260) rarD 905313..906209 (-) 897 WP_003084792.1 EamA family transporter RarD -
  R5018_RS04265 (R5018_04265) - 906412..907386 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  R5018_RS04270 (R5018_04270) - 907448..908206 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  R5018_RS04275 (R5018_04275) - 908274..908594 (-) 321 WP_003084799.1 YfiM family lipoprotein -
  R5018_RS04280 (R5018_04280) comF 908636..909361 (-) 726 WP_014604095.1 ComF family protein Machinery gene
  R5018_RS04285 (R5018_04285) - 909500..909793 (-) 294 WP_003084806.1 hypothetical protein -
  R5018_RS04290 (R5018_04290) - 909847..910773 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  R5018_RS04295 (R5018_04295) - 910891..911649 (+) 759 WP_003084810.1 5-oxoprolinase subunit PxpA -
  R5018_RS04300 (R5018_04300) - 911726..911974 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  R5018_RS04305 (R5018_04305) - 911985..913361 (+) 1377 WP_003084815.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  R5018_RS04310 (R5018_04310) - 913363..914241 (+) 879 WP_003084817.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26982.50 Da        Isoelectric Point: 10.3093

>NTDB_id=820846 R5018_RS04280 WP_014604095.1 908636..909361(-) (comF) [Pseudomonas aeruginosa strain HPA1406]
MSFPLRPLTRWLLPPPACLLCAACSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=820846 R5018_RS04280 WP_014604095.1 908636..909361(-) (comF) [Pseudomonas aeruginosa strain HPA1406]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCTGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCAGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382