Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   R4V96_RS01950 Genome accession   NZ_CP137162
Coordinates   415431..415898 (-) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli strain YA-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410431..420898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4V96_RS01925 (R4V96_01915) rpsG 410572..411042 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  R4V96_RS01930 (R4V96_01920) fusA 411139..413253 (+) 2115 WP_000124700.1 elongation factor G -
  R4V96_RS01935 (R4V96_01925) tuf 413324..414508 (+) 1185 WP_000031783.1 elongation factor Tu -
  R4V96_RS01940 (R4V96_01930) bfd 414691..414885 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  R4V96_RS01945 (R4V96_01935) bfr 414958..415434 (+) 477 WP_000675515.1 bacterioferritin -
  R4V96_RS01950 (R4V96_01940) pilD 415431..415898 (-) 468 WP_000340167.1 A24 family peptidase Machinery gene
  R4V96_RS01955 (R4V96_01945) rpsJ 416277..416588 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  R4V96_RS01960 (R4V96_01950) rplC 416621..417250 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  R4V96_RS01965 (R4V96_01955) rplD 417261..417866 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  R4V96_RS01970 (R4V96_01960) rplW 417863..418165 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  R4V96_RS01975 (R4V96_01965) rplB 418183..419004 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  R4V96_RS01980 (R4V96_01970) rpsS 419021..419299 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  R4V96_RS01985 (R4V96_01975) rplV 419314..419646 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  R4V96_RS01990 (R4V96_01980) rpsC 419664..420365 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  R4V96_RS01995 (R4V96_01985) rplP 420378..420788 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=820457 R4V96_RS01950 WP_000340167.1 415431..415898(-) (pilD) [Escherichia coli strain YA-1]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=820457 R4V96_RS01950 WP_000340167.1 415431..415898(-) (pilD) [Escherichia coli strain YA-1]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361