Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R4V96_RS01220 Genome accession   NZ_CP137162
Coordinates   263821..264585 (-) Length   254 a.a.
NCBI ID   WP_001136236.1    Uniprot ID   A7ZT17
Organism   Escherichia coli strain YA-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 258821..269585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4V96_RS01195 (R4V96_01185) yhhJ 260663..261787 (+) 1125 WP_001314210.1 ABC transporter permease -
  R4V96_RS01200 (R4V96_01190) - 261860..262135 (+) 276 WP_001259388.1 type II toxin-antitoxin system HicA family toxin -
  R4V96_RS01205 (R4V96_01195) - 262132..262491 (+) 360 WP_000593555.1 type II toxin-antitoxin system HicB family antitoxin -
  R4V96_RS01210 (R4V96_01200) nikR 262611..263012 (-) 402 WP_001190064.1 nickel-responsive transcriptional regulator NikR -
  R4V96_RS01215 (R4V96_01205) nikE 263018..263824 (-) 807 WP_000173666.1 nickel import ATP-binding protein NikE -
  R4V96_RS01220 (R4V96_01210) amiE 263821..264585 (-) 765 WP_001136236.1 nickel import ATP-binding protein NikD Regulator
  R4V96_RS01225 (R4V96_01215) nikC 264585..265418 (-) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  R4V96_RS01230 (R4V96_01220) nikB 265415..266359 (-) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  R4V96_RS01235 (R4V96_01225) nikA 266359..267933 (-) 1575 WP_000953356.1 nickel ABC transporter substrate-binding protein -
  R4V96_RS01240 (R4V96_01230) acpT 268044..268631 (-) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26833.42 Da        Isoelectric Point: 6.5992

>NTDB_id=820453 R4V96_RS01220 WP_001136236.1 263821..264585(-) (amiE) [Escherichia coli strain YA-1]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=820453 R4V96_RS01220 WP_001136236.1 263821..264585(-) (amiE) [Escherichia coli strain YA-1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTCACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACAAGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZT17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398