Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   R4540_RS01055 Genome accession   NZ_CP137135
Coordinates   221926..222909 (-) Length   327 a.a.
NCBI ID   WP_000211036.1    Uniprot ID   A0AAX1QPY5
Organism   Vibrio cholerae V52     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 216926..227909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4540_RS01040 (R4540_01040) - 218226..219110 (-) 885 WP_001110418.1 N-acetylglucosamine kinase -
  R4540_RS01045 (R4540_01045) - 219107..220831 (-) 1725 WP_000925616.1 glycoside hydrolase family 9 protein -
  R4540_RS01050 (R4540_01050) - 220888..221883 (-) 996 WP_000042558.1 ABC transporter ATP-binding protein -
  R4540_RS01055 (R4540_01055) amiE 221926..222909 (-) 984 WP_000211036.1 ABC transporter ATP-binding protein Regulator
  R4540_RS01060 (R4540_01060) - 222912..223937 (-) 1026 WP_000646270.1 ABC transporter permease -
  R4540_RS01065 (R4540_01065) - 223940..224926 (-) 987 WP_000540337.1 ABC transporter permease -
  R4540_RS01070 (R4540_01070) - 225096..226766 (-) 1671 WP_000880698.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36684.50 Da        Isoelectric Point: 6.9407

>NTDB_id=820303 R4540_RS01055 WP_000211036.1 221926..222909(-) (amiE) [Vibrio cholerae V52]
MTTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKY
SDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVIMRHTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQ
RLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQ
ILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSNCHLYTQ
SNATIKR

Nucleotide


Download         Length: 984 bp        

>NTDB_id=820303 R4540_RS01055 WP_000211036.1 221926..222909(-) (amiE) [Vibrio cholerae V52]
ATGACTACGCCATTAATCTCAATCCGCAACTTATGCGTGGACTACATTACCGATGCTGGTGACGTCCGTGCCTGTAACAA
TGTGAGCTTTGATTTAGCCCCCGGCGAGGTGTTTGGCCTTGCGGGTGAATCCGGCTGTGGTAAATCCACCGTTGCCTTCT
CGCTGATGCGCCTGCATAAGCCGCCCGCGTTCATCACTGGTGGCGAGGTGATCTTCAACGGTGAAGACATCCTGAAATAC
AGTGATGAGCGCATGCAAGCGTTCCGTTGGAAAGAAATGTCGATGGTATTTCAAAGTGCGATGAACGCGCTGAACCCAGT
TCTGACCATGGAAGAGCAATTTTGCGATGTGATCATGCGCCATACCAATATGACGCGTGAACAAGCCAAACGTCGTGCTG
AAGGGCTGTTAGAAATTGTGGATATTCACCCAAGCCGTCTTAACGATTATCCGCACCAGTTCTCGGGTGGTATGCGTCAA
CGCTTGGTGATTGCAATTGCGCTCGCGCTCAATCCAAAAATGATCATTATGGATGAACCTACGACCGCGCTAGATGTTGT
CGTTCAGCGTGAAATTCTGCAGAAGATCTACGCACTCAAAGAAGAGTTTGGTTTCTCTATTCTGTTCATTACTCATGACT
TGTCACTGATGGTCGAGTTCTCAGACCGTATCGGCATCATGTACTCCGGTGAATTGATTGAAGTGGCTCCTTCAAAACAA
ATTCTGGAAACCCCTTACCACCCTTATACCAAAGGGTTGGGAAGTTCTTTTCCACCATTAACTGGACCAAAAACAAAACT
CACAGGGATCCCTGGAAACCCACTCAACCTGTTGGACATTCCTCAAGGTTGCCGTTTCCAAGCTCGCTGTGACCGAGTTC
ATGAAGCTTGTACTAAGGTACCGACCGTACTGCGCCAAATCGAGCATGGCCGCTTTTCTAACTGCCATCTCTATACGCAA
TCGAACGCCACTATAAAACGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(26-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX1QPY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.69

88.685

0.361
  amiE Streptococcus thermophilus LMD-9

40.69

88.685

0.361