Detailed information NTG0820198

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: R4705_RS03020
• Genome accession: NZ_CP137115
• Coordinates: 578238..579509 (+)
• Length: 423 a.a.
• NCBI ID: WP_050084122.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain 20614-6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 573238..584509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4705_RS02985	-	574303..574731 (-)	429	WP_000418168.1	NUDIX hydrolase	-
R4705_RS02990	-	574712..575800 (-)	1089	WP_000719722.1	site-2 protease family protein	-
R4705_RS02995	-	575819..576289 (-)	471	WP_000257097.1	DUF3013 family protein	-
R4705_RS03000	-	576580..577032 (-)	453	WP_317815589.1	type II toxin-antitoxin system HicB family antitoxin	-
R4705_RS03005	-	577069..577248 (-)	180	WP_001132283.1	type II toxin-antitoxin system HicA family toxin	-
R4705_RS03010	-	577385..577564 (-)	180	WP_001809903.1	hypothetical protein	-
R4705_RS03015	-	577729..577968 (-)	240	WP_317815590.1	hypothetical protein	-
R4705_RS03020	rarA	578238..579509 (+)	1272	WP_050084122.1	replication-associated recombination protein A	Machinery gene
R4705_RS03030	-	580055..581374 (-)	1320	WP_050084121.1	glycoside hydrolase family 32 protein	-
R4705_RS03035	-	581384..583000 (-)	1617	WP_000669745.1	ABC transporter substrate-binding protein	-
R4705_RS03040	-	583029..583919 (-)	891	WP_000797961.1	carbohydrate ABC transporter permease	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 47079.55 Da
• Isoelectric Point: 6.0602

>NTDB_id=820198 R4705_RS03020 WP_050084122.1 578238..579509(+) (rarA) [Streptococcus pneumoniae strain 20614-6]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSDGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWIKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide

• Length: 1272 bp

>NTDB_id=820198 R4705_RS03020 WP_050084122.1 578238..579509(+) (rarA) [Streptococcus pneumoniae strain 20614-6]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATACGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGATGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACAAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATTGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGATCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-416)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	57.946	96.69	0.56