Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R4700_RS01815 Genome accession   NZ_CP137112
Coordinates   350131..350853 (-) Length   240 a.a.
NCBI ID   WP_001863768.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 02H2025     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 345131..355853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4700_RS01805 - 347705..348871 (-) 1167 WP_033708084.1 MalY/PatB family protein -
  R4700_RS01810 - 348879..349973 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  R4700_RS01815 rcrP 350131..350853 (-) 723 WP_001863768.1 ABC transporter ATP-binding protein Regulator
  R4700_RS01820 - 351040..351806 (-) 767 Protein_361 ABC transporter ATP-binding protein -
  R4700_RS01825 amiA 351978..353936 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  R4700_RS01830 - 354140..355762 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27188.00 Da        Isoelectric Point: 4.9157

>NTDB_id=819832 R4700_RS01815 WP_001863768.1 350131..350853(-) (rcrP) [Streptococcus pneumoniae strain 02H2025]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=819832 R4700_RS01815 WP_001863768.1 350131..350853(-) (rcrP) [Streptococcus pneumoniae strain 02H2025]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367