Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R8613_RS08755 Genome accession   NZ_AP026919
Coordinates   1689635..1690906 (+) Length   423 a.a.
NCBI ID   WP_001113210.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1684635..1695906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8613_RS08715 (PC0012_17080) - 1684827..1685861 (-) 1035 WP_000747916.1 ATP-binding protein -
  R8613_RS08720 (PC0012_17090) - 1685980..1686129 (-) 150 Protein_1734 7,8-dihydro-8-oxoguanine-triphosphatase -
  R8613_RS08725 (PC0012_17100) - 1686110..1687198 (-) 1089 WP_000719720.1 site-2 protease family protein -
  R8613_RS08730 (PC0012_17110) - 1687217..1687687 (-) 471 WP_000257084.1 DUF3013 family protein -
  R8613_RS08735 (PC0012_17120) - 1687978..1688430 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R8613_RS08740 (PC0012_17130) - 1688467..1688646 (-) 180 WP_025169096.1 type II toxin-antitoxin system HicA family toxin -
  R8613_RS08745 (PC0012_17140) - 1688783..1688962 (-) 180 WP_001809903.1 hypothetical protein -
  R8613_RS08750 - 1689127..1689365 (-) 239 Protein_1740 hypothetical protein -
  R8613_RS08755 (PC0012_17150) rarA 1689635..1690906 (+) 1272 WP_001113210.1 replication-associated recombination protein A Machinery gene
  R8613_RS08765 (PC0012_17160) - 1691453..1692772 (-) 1320 WP_317648192.1 glycoside hydrolase family 32 protein -
  R8613_RS08770 (PC0012_17170) - 1692782..1693627 (-) 846 WP_000819520.1 carbohydrate ABC transporter permease -
  R8613_RS08775 (PC0012_17180) - 1693629..1694531 (-) 903 WP_000032532.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46978.40 Da        Isoelectric Point: 5.9140

>NTDB_id=81981 R8613_RS08755 WP_001113210.1 1689635..1690906(+) (rarA) [Streptococcus pneumoniae strain PZ900700012]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=81981 R8613_RS08755 WP_001113210.1 1689635..1690906(+) (rarA) [Streptococcus pneumoniae strain PZ900700012]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGAGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGTTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCAGAAGCCCGCATTCTCATCGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.435

96.69

0.565

Multiple sequence alignment