Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R8613_RS07255 Genome accession   NZ_AP026919
Coordinates   1402106..1402828 (-) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700012     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1397106..1407828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8613_RS07245 (PC0012_14140) - 1399681..1400847 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  R8613_RS07250 (PC0012_14150) - 1400855..1401949 (-) 1095 WP_317648123.1 cystathionine gamma-synthase -
  R8613_RS07255 (PC0012_14160) rcrP 1402106..1402828 (-) 723 WP_001010371.1 ABC transporter ATP-binding protein Regulator
  R8613_RS07260 (PC0012_14170) - 1402901..1403788 (-) 888 WP_001864980.1 ABC transporter ATP-binding protein -
  R8613_RS07265 (PC0012_14180) amiA 1403960..1405918 (-) 1959 WP_000748875.1 peptide ABC transporter substrate-binding protein Regulator
  R8613_RS07270 (PC0012_14190) - 1406121..1407743 (-) 1623 WP_024478395.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=81967 R8613_RS07255 WP_001010371.1 1402106..1402828(-) (rcrP) [Streptococcus pneumoniae strain PZ900700012]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=81967 R8613_RS07255 WP_001010371.1 1402106..1402828(-) (rcrP) [Streptococcus pneumoniae strain PZ900700012]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAGTGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363

Multiple sequence alignment