Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R4712_RS07710 Genome accession   NZ_CP137110
Coordinates   1493022..1494293 (-) Length   423 a.a.
NCBI ID   WP_001113211.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2041     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1488022..1499293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4712_RS07690 - 1489397..1490299 (+) 903 WP_000032533.1 carbohydrate ABC transporter permease -
  R4712_RS07695 - 1490301..1491146 (+) 846 WP_000819519.1 carbohydrate ABC transporter permease -
  R4712_RS07700 - 1491156..1492475 (+) 1320 WP_044812423.1 glycoside hydrolase family 32 protein -
  R4712_RS07710 rarA 1493022..1494293 (-) 1272 WP_001113211.1 replication-associated recombination protein A Machinery gene
  R4712_RS07715 - 1494563..1494802 (+) 240 WP_000818078.1 hypothetical protein -
  R4712_RS07720 - 1494967..1495146 (+) 180 WP_001809903.1 hypothetical protein -
  R4712_RS07725 - 1495283..1495462 (+) 180 WP_001132281.1 type II toxin-antitoxin system HicA family toxin -
  R4712_RS07730 - 1495499..1495951 (+) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R4712_RS07735 - 1496242..1496712 (+) 471 WP_044812422.1 DUF3013 family protein -
  R4712_RS07740 - 1496768..1497310 (+) 543 WP_044812420.1 hypothetical protein -
  R4712_RS07745 - 1497360..1497794 (+) 435 WP_000421871.1 NUDIX hydrolase -
  R4712_RS07750 - 1497791..1498264 (+) 474 WP_000631889.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46997.44 Da        Isoelectric Point: 5.9471

>NTDB_id=819668 R4712_RS07710 WP_001113211.1 1493022..1494293(-) (rarA) [Streptococcus pneumoniae strain 16H2041]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=819668 R4712_RS07710 WP_001113211.1 1493022..1494293(-) (rarA) [Streptococcus pneumoniae strain 16H2041]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATACGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATTGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.757

99.054

0.572