Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R8613_RS06485 Genome accession   NZ_AP026919
Coordinates   1247951..1249699 (-) Length   582 a.a.
NCBI ID   WP_219565748.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700012     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242951..1254699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8613_RS06440 (PC0012_12470) - 1243090..1243677 (-) 588 WP_000821279.1 CPBP family intramembrane glutamic endopeptidase -
  R8613_RS06445 - 1243680..1243913 (-) 234 Protein_1280 transcriptional regulator -
  R8613_RS06450 (PC0012_12490) - 1243926..1244306 (-) 381 WP_000566531.1 arsenate reductase family protein -
  R8613_RS06455 (PC0012_12500) - 1244299..1244637 (-) 339 Protein_1282 hypothetical protein -
  R8613_RS06460 (PC0012_12510) - 1244633..1244884 (-) 252 Protein_1283 replication initiator protein A -
  R8613_RS06465 (PC0012_12520) - 1244884..1245054 (-) 171 WP_001168348.1 hypothetical protein -
  R8613_RS06470 (PC0012_12530) rplL 1245241..1245609 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  R8613_RS06475 (PC0012_12540) rplJ 1245685..1246185 (-) 501 WP_138026894.1 50S ribosomal protein L10 -
  R8613_RS06480 (PC0012_12550) - 1246435..1247694 (-) 1260 WP_317648561.1 TRZ/ATZ family protein -
  R8613_RS06485 (PC0012_12560) rcrQ 1247951..1249699 (-) 1749 WP_219565748.1 ABC transporter ATP-binding protein Regulator
  R8613_RS06490 (PC0012_12570) - 1249701..1251425 (-) 1725 WP_219565747.1 ABC transporter ATP-binding protein -
  R8613_RS06495 (PC0012_12580) msrB 1251483..1252421 (-) 939 WP_000818203.1 peptide-methionine (R)-S-oxide reductase MsrB -
  R8613_RS06500 (PC0012_12590) - 1252488..1252640 (-) 153 WP_001835993.1 hypothetical protein -
  R8613_RS06505 (PC0012_12600) thrB 1252716..1253585 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64807.32 Da        Isoelectric Point: 7.0720

>NTDB_id=81964 R8613_RS06485 WP_219565748.1 1247951..1249699(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700012]
MKRQTVNQTLKRLAVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRASLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFVKLMKGRTSFIIAHCLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=81964 R8613_RS06485 WP_219565748.1 1247951..1249699(-) (rcrQ) [Streptococcus pneumoniae strain PZ900700012]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGGGAGCGAATCATCCATAAACTCCATCG
GTTACCGATTGCCTTTGTAGATAGGCAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAATGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGCATCATTGAGACAGCAGTTTGGCATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGTAAAACTCATGAAGGGCCGCACAAGTTTCATCATTG
CTCACTGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.258

97.766

0.364