Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R4704_RS03160 Genome accession   NZ_CP137109
Coordinates   619461..620732 (+) Length   423 a.a.
NCBI ID   WP_001113208.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 614461..625732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4704_RS03120 - 614933..615082 (-) 150 Protein_621 7,8-dihydro-8-oxoguanine-triphosphatase -
  R4704_RS03125 - 615063..616151 (-) 1089 WP_000719722.1 site-2 protease family protein -
  R4704_RS03130 - 616170..616640 (-) 471 WP_000257089.1 DUF3013 family protein -
  R4704_RS03135 - 616918..617732 (-) 815 Protein_624 IS5-like element IS1515 family transposase -
  R4704_RS03140 - 617804..618256 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R4704_RS03145 - 618293..618472 (-) 180 WP_033705165.1 type II toxin-antitoxin system HicA family toxin -
  R4704_RS03150 - 618609..618788 (-) 180 WP_001809903.1 hypothetical protein -
  R4704_RS03155 - 618953..619191 (-) 239 Protein_628 hypothetical protein -
  R4704_RS03160 rarA 619461..620732 (+) 1272 WP_001113208.1 replication-associated recombination protein A Machinery gene
  R4704_RS03170 - 621278..622597 (-) 1320 WP_000502552.1 glycoside hydrolase family 32 protein -
  R4704_RS03175 - 622607..624223 (-) 1617 WP_000669745.1 ABC transporter substrate-binding protein -
  R4704_RS03180 - 624252..625142 (-) 891 WP_166735726.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46948.37 Da        Isoelectric Point: 5.9140

>NTDB_id=819482 R4704_RS03160 WP_001113208.1 619461..620732(+) (rarA) [Streptococcus pneumoniae strain 11012]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKASGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=819482 R4704_RS03160 WP_001113208.1 619461..620732(+) (rarA) [Streptococcus pneumoniae strain 11012]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGTTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCAGAAGCCCGCATTCTCATCGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAGCATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.68

96.69

0.567