Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   R4704_RS02230 Genome accession   NZ_CP137109
Coordinates   436757..437545 (-) Length   262 a.a.
NCBI ID   WP_166735720.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 11012     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 431757..442545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4704_RS02200 - 432733..433245 (-) 513 WP_001049323.1 adenine phosphoribosyltransferase -
  R4704_RS02205 - 433333..434091 (-) 759 WP_166735719.1 class I SAM-dependent methyltransferase -
  R4704_RS02210 - 434309..434479 (+) 171 WP_000403103.1 hypothetical protein -
  R4704_RS02215 - 434602..435732 (-) 1131 WP_000229961.1 ABC transporter ATP-binding protein -
  R4704_RS02225 - 436182..436757 (-) 576 WP_000158722.1 cysteine hydrolase family protein -
  R4704_RS02230 codY 436757..437545 (-) 789 WP_166735720.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  R4704_RS02235 - 437809..439383 (-) 1575 WP_033705290.1 DEAD/DEAH box helicase -
  R4704_RS02240 - 439582..440808 (-) 1227 WP_000841570.1 OFA family MFS transporter -
  R4704_RS02245 - 441001..442317 (+) 1317 WP_000958941.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29755.12 Da        Isoelectric Point: 5.7759

>NTDB_id=819474 R4704_RS02230 WP_166735720.1 436757..437545(-) (codY) [Streptococcus pneumoniae strain 11012]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPVESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREENEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=819474 R4704_RS02230 WP_166735720.1 436757..437545(-) (codY) [Streptococcus pneumoniae strain 11012]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTCCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTGCCTGTTGAGCATGATATGAGTATTTTCCCTGTTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAGCTTCTTAAC
TTCCAACGTGAAGAAAATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGCAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

48.374

93.893

0.454