Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R4711_RS07995 Genome accession   NZ_CP137107
Coordinates   1547775..1549046 (-) Length   423 a.a.
NCBI ID   WP_001113218.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15H4024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1542775..1554046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4711_RS07975 - 1544150..1545052 (+) 903 WP_000032532.1 carbohydrate ABC transporter permease -
  R4711_RS07980 - 1545054..1545899 (+) 846 WP_000819520.1 carbohydrate ABC transporter permease -
  R4711_RS07985 - 1545909..1547228 (+) 1320 WP_050263892.1 glycoside hydrolase family 32 protein -
  R4711_RS07995 rarA 1547775..1549046 (-) 1272 WP_001113218.1 replication-associated recombination protein A Machinery gene
  R4711_RS08000 - 1549316..1549555 (+) 240 WP_000818078.1 hypothetical protein -
  R4711_RS08005 - 1549720..1549899 (+) 180 WP_001048906.1 hypothetical protein -
  R4711_RS08010 - 1550036..1550215 (+) 180 WP_001132285.1 type II toxin-antitoxin system HicA family toxin -
  R4711_RS08015 - 1550252..1550704 (+) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R4711_RS08020 - 1550995..1551465 (+) 471 WP_000257084.1 DUF3013 family protein -
  R4711_RS08025 - 1551484..1552551 (+) 1068 WP_000719723.1 site-2 protease family protein -
  R4711_RS08030 - 1552553..1552702 (+) 150 Protein_1537 7,8-dihydro-8-oxoguanine-triphosphatase -
  R4711_RS08035 - 1552821..1553855 (+) 1035 WP_000747915.1 ATP-binding protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46968.49 Da        Isoelectric Point: 6.2424

>NTDB_id=819316 R4711_RS07995 WP_001113218.1 1547775..1549046(-) (rarA) [Streptococcus pneumoniae strain 15H4024]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDKGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=819316 R4711_RS07995 WP_001113218.1 1547775..1549046(-) (rarA) [Streptococcus pneumoniae strain 15H4024]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACAAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTTCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTAAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57