Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   R4708_RS09605 Genome accession   NZ_CP137104
Coordinates   1838625..1839347 (+) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain LM     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1833625..1844347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4708_RS09585 - 1833710..1835332 (+) 1623 WP_000017793.1 polysaccharide biosynthesis protein -
  R4708_RS09590 amiA3 1835533..1837494 (+) 1962 WP_000748865.1 peptide ABC transporter substrate-binding protein Regulator
  R4708_RS09595 - 1837666..1837899 (+) 234 WP_000769000.1 hypothetical protein -
  R4708_RS09600 - 1837917..1838438 (+) 522 Protein_1853 ABC transporter transmembrane domain-containing protein -
  R4708_RS09605 rcrP 1838625..1839347 (+) 723 WP_001010371.1 ABC transporter ATP-binding protein Regulator
  R4708_RS09610 - 1839505..1840599 (+) 1095 WP_000031964.1 cystathionine gamma-synthase -
  R4708_RS09615 - 1840607..1841773 (+) 1167 WP_000521384.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=818966 R4708_RS09605 WP_001010371.1 1838625..1839347(+) (rcrP) [Streptococcus pneumoniae strain LM]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=818966 R4708_RS09605 WP_001010371.1 1838625..1839347(+) (rcrP) [Streptococcus pneumoniae strain LM]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363