Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   R4708_RS09010 Genome accession   NZ_CP137104
Coordinates   1737915..1738703 (+) Length   262 a.a.
NCBI ID   WP_000940733.1    Uniprot ID   C1CSK2
Organism   Streptococcus pneumoniae strain LM     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1732915..1743703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4708_RS08995 - 1733142..1734458 (-) 1317 WP_000958925.1 FAD-containing oxidoreductase -
  R4708_RS09000 - 1734651..1735877 (+) 1227 WP_000841572.1 OFA family MFS transporter -
  R4708_RS09005 - 1736076..1737650 (+) 1575 WP_000671112.1 DEAD/DEAH box helicase -
  R4708_RS09010 codY 1737915..1738703 (+) 789 WP_000940733.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  R4708_RS09015 - 1738703..1739278 (+) 576 WP_000158722.1 cysteine hydrolase family protein -
  R4708_RS09025 - 1739729..1740859 (+) 1131 WP_000229959.1 ABC transporter ATP-binding protein -
  R4708_RS09030 - 1741006..1741152 (-) 147 WP_001821381.1 hypothetical protein -
  R4708_RS09035 - 1741360..1742118 (+) 759 WP_001287224.1 class I SAM-dependent methyltransferase -
  R4708_RS09040 - 1742205..1742717 (+) 513 WP_001049323.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29756.15 Da        Isoelectric Point: 5.7806

>NTDB_id=818960 R4708_RS09010 WP_000940733.1 1737915..1738703(+) (codY) [Streptococcus pneumoniae strain LM]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPVESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=818960 R4708_RS09010 WP_000940733.1 1737915..1738703(+) (codY) [Streptococcus pneumoniae strain LM]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTTCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGATCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTACCTGTTGAGCATGATATGAGTATTTTCCCTGTTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAGCTTCTTAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGAAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1CSK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

48.374

93.893

0.454