Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QAO28_RS10320 Genome accession   NZ_CP123104
Coordinates   2104345..2104914 (+) Length   189 a.a.
NCBI ID   WP_045176736.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IT-MSSA53     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2099345..2109914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO28_RS10295 (QAO28_10275) cysE 2100558..2101205 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  QAO28_RS10300 (QAO28_10280) cysS 2101189..2102589 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QAO28_RS10305 (QAO28_10285) - 2102582..2102986 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QAO28_RS10310 (QAO28_10290) rlmB 2102994..2103740 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QAO28_RS10315 (QAO28_10295) - 2103740..2104264 (+) 525 WP_000664738.1 NYN domain-containing protein -
  QAO28_RS10320 (QAO28_10300) sigH 2104345..2104914 (+) 570 WP_045176736.1 sigma-70 family RNA polymerase sigma factor Regulator
  QAO28_RS10325 (QAO28_10305) rpmG 2105029..2105172 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  QAO28_RS10330 (QAO28_10310) secE 2105228..2105410 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QAO28_RS10335 (QAO28_10315) nusG 2105423..2105971 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QAO28_RS10340 (QAO28_10320) rplK 2106152..2106574 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  QAO28_RS10345 (QAO28_10325) rplA 2106782..2107474 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  QAO28_RS10350 (QAO28_10330) rplJ 2107746..2108246 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  QAO28_RS10355 (QAO28_10335) rplL 2108289..2108657 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QAO28_RS10360 (QAO28_10340) - 2108832..2109440 (+) 609 WP_023913388.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23113.96 Da        Isoelectric Point: 9.5790

>NTDB_id=818786 QAO28_RS10320 WP_045176736.1 2104345..2104914(+) (sigH) [Staphylococcus aureus strain IT-MSSA53]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQYKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=818786 QAO28_RS10320 WP_045176736.1 2104345..2104914(+) (sigH) [Staphylococcus aureus strain IT-MSSA53]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTATAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979