Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R8619_RS08265 Genome accession   NZ_AP026918
Coordinates   1616185..1617456 (+) Length   423 a.a.
NCBI ID   WP_001113185.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1611185..1622456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8619_RS08230 (PC0009_16230) - 1612250..1612678 (-) 429 WP_000418168.1 NUDIX hydrolase -
  R8619_RS08235 (PC0009_16240) - 1612659..1613747 (-) 1089 WP_000719722.1 site-2 protease family protein -
  R8619_RS08240 (PC0009_16250) - 1613766..1614236 (-) 471 WP_000257084.1 DUF3013 family protein -
  R8619_RS08245 (PC0009_16260) - 1614527..1614979 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R8619_RS08250 (PC0009_16270) - 1615016..1615195 (-) 180 WP_001132283.1 type II toxin-antitoxin system HicA family toxin -
  R8619_RS08255 (PC0009_16280) - 1615332..1615511 (-) 180 WP_001809903.1 hypothetical protein -
  R8619_RS08260 (PC0009_16290) - 1615676..1615915 (-) 240 WP_000818078.1 hypothetical protein -
  R8619_RS08265 (PC0009_16300) rarA 1616185..1617456 (+) 1272 WP_001113185.1 replication-associated recombination protein A Machinery gene
  R8619_RS08275 (PC0009_16310) - 1617874..1619000 (-) 1127 Protein_1635 tyrosine-type recombinase/integrase -
  R8619_RS08280 (PC0009_16330) - 1619002..1619184 (-) 183 WP_000655516.1 DUF3173 domain-containing protein -
  R8619_RS08285 (PC0009_16340) - 1619200..1620243 (-) 1044 WP_001031659.1 hypothetical protein -
  R8619_RS08290 (PC0009_16350) - 1620372..1620632 (-) 261 WP_000665589.1 hypothetical protein -
  R8619_RS08295 (PC0009_16360) - 1620959..1622272 (-) 1314 WP_000472765.1 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46962.40 Da        Isoelectric Point: 6.0598

>NTDB_id=81861 R8619_RS08265 WP_001113185.1 1616185..1617456(+) (rarA) [Streptococcus pneumoniae strain PZ900700009]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKNSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFNFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=81861 R8619_RS08265 WP_001113185.1 1616185..1617456(+) (rarA) [Streptococcus pneumoniae strain PZ900700009]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAAACA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTTTCCG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTTGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTAATTTTCCAATAGAACTAGATGAGGATGCGCTAGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGTTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.946

96.69

0.56

Multiple sequence alignment