Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   R3L04_RS17015 Genome accession   NZ_CP137075
Coordinates   3519515..3521272 (-) Length   585 a.a.
NCBI ID   WP_001020923.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3514515..3526272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L04_RS16985 (R3L04_17000) - 3515104..3515655 (+) 552 WP_000913443.1 tetratricopeptide repeat protein -
  R3L04_RS16990 (R3L04_17005) - 3515677..3516576 (-) 900 WP_001125745.1 NUDIX domain-containing protein -
  R3L04_RS16995 (R3L04_17010) hemP 3516713..3516883 (+) 171 WP_000993415.1 hemin uptake protein HemP -
  R3L04_RS17000 (R3L04_17015) - 3516949..3518307 (-) 1359 WP_001257348.1 cell wall metabolism sensor histidine kinase WalK -
  R3L04_RS17005 (R3L04_17020) - 3518304..3518966 (-) 663 WP_001221456.1 response regulator transcription factor -
  R3L04_RS17010 (R3L04_17025) - 3519074..3519433 (-) 360 WP_000783086.1 NirD/YgiW/YdeI family stress tolerance protein -
  R3L04_RS17015 (R3L04_17030) pilB 3519515..3521272 (-) 1758 WP_001020923.1 GspE/PulE family protein Machinery gene
  R3L04_RS17020 (R3L04_17035) - 3521560..3522828 (+) 1269 WP_001052944.1 DUF4010 domain-containing protein -
  R3L04_RS17025 (R3L04_17040) tsaA 3522838..3523566 (-) 729 WP_005119947.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  R3L04_RS17030 (R3L04_17045) - 3523671..3524450 (+) 780 WP_000718711.1 ferredoxin--NADP reductase -
  R3L04_RS17035 (R3L04_17050) - 3524505..3525374 (-) 870 WP_000117594.1 PhzF family phenazine biosynthesis protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66915.73 Da        Isoelectric Point: 7.0339

>NTDB_id=818178 R3L04_RS17015 WP_001020923.1 3519515..3521272(-) (pilB) [Acinetobacter baumannii strain SNUBHAB0006]
MNIHVEIDTHWCLEQLLQEGRITERDKLLVQTTNRQKDQLKWHPLQWIAHFNLKDQHHVQAHLSLNRLCQWFADRAQLPL
FVIDPLKADVSVLTQVMSQEFAIRNHILAVEVHADRIVIGTDQPFQTDWLNNLEKSLAPKKIERVFLNPEQLQRYLREYY
QVSRAVNSAQKDAAHDRDNKGVEALLQLGDSQNPDANDQHIVKLVDWILQFAFEQSASDIHMEPRKENGKVRFRIDGVLH
TIYNMPSNTLTAVISRIKILGRLNVAEKRKPQDGRLKTRTPKGQETELRLSTLPTAFGEKLVMRIFDPDVLVRSFQQLGF
DQSLLQQWQRITQNSHGIILVTGPTGSGKTTTLYSSLKQLATEQVNVCTIEDPIEMLEPSFNQMQVNHAIELGFADGVRA
LMRQDPDIIMIGEIRDQDTANMAIQAALTGHLVLSTLHTNDAPSSLTRLHDLGVQPFLTAATILGLLAQRLVRKLCPHCK
QQTHINEDEWQHLTFDYIMEMPEKVYRAVGCEECRHTGYKGRIGIYEFMPVSLELKHLISSHATLNELRSQTKKESVEPL
RIAGTRKVIEGLTTLEEVLRVVPLN

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=818178 R3L04_RS17015 WP_001020923.1 3519515..3521272(-) (pilB) [Acinetobacter baumannii strain SNUBHAB0006]
ATGAATATACATGTAGAAATAGACACACATTGGTGTCTAGAACAACTATTACAAGAAGGCCGTATCACTGAACGAGATAA
GTTACTTGTACAAACCACAAATAGGCAAAAAGATCAGTTGAAATGGCATCCATTACAGTGGATTGCGCATTTTAATTTAA
AAGACCAACATCATGTACAAGCACATTTAAGTTTAAACCGTCTCTGCCAATGGTTTGCAGATCGGGCGCAATTACCTTTA
TTTGTGATTGATCCTTTAAAGGCAGATGTGAGTGTTTTAACTCAAGTCATGTCGCAAGAGTTTGCGATTCGTAATCATAT
TTTAGCTGTAGAAGTCCATGCGGACCGGATTGTGATAGGAACAGACCAGCCTTTTCAAACAGACTGGCTAAATAATTTAG
AGAAGAGTTTAGCACCCAAAAAAATTGAACGGGTATTTCTCAACCCCGAGCAATTACAACGTTATTTACGAGAATATTAT
CAAGTCAGCCGAGCAGTAAACTCAGCTCAAAAAGATGCGGCTCATGACCGTGATAACAAAGGTGTAGAGGCGCTTTTACA
ACTTGGCGATAGCCAAAACCCTGATGCCAATGATCAGCATATTGTGAAATTGGTCGACTGGATTTTGCAATTTGCATTTG
AACAGAGCGCTAGTGACATTCACATGGAACCACGTAAAGAAAATGGCAAAGTTCGGTTCCGTATCGATGGTGTTTTACAT
ACCATTTATAACATGCCTTCAAATACTCTGACCGCGGTGATTTCTCGGATTAAAATTTTAGGGCGACTAAATGTAGCAGA
AAAGCGTAAACCGCAAGATGGTCGATTAAAAACACGTACACCGAAAGGACAAGAAACCGAACTACGTCTATCTACCTTAC
CAACAGCGTTTGGTGAAAAACTGGTTATGCGTATTTTTGATCCAGATGTACTAGTACGTTCTTTTCAGCAATTAGGTTTC
GACCAGTCTTTATTACAGCAATGGCAGCGTATTACGCAAAATAGTCACGGCATTATTTTGGTTACGGGGCCAACAGGTTC
TGGTAAAACTACAACGTTATATTCTTCTTTAAAACAGCTTGCAACCGAGCAGGTCAATGTCTGTACCATTGAAGATCCGA
TTGAAATGCTAGAGCCTAGTTTTAACCAAATGCAGGTTAATCATGCAATTGAACTGGGCTTTGCAGATGGTGTACGTGCG
CTTATGCGACAAGACCCAGACATTATTATGATTGGGGAAATTCGTGACCAAGATACTGCGAATATGGCCATTCAGGCTGC
ACTCACAGGCCATTTAGTATTATCAACTTTACATACCAATGATGCGCCGTCTAGTTTGACCCGTTTACACGATTTAGGCG
TACAACCATTTTTAACAGCCGCGACTATTTTAGGTTTATTAGCGCAGCGCTTAGTGCGTAAGCTTTGCCCGCACTGCAAA
CAACAAACTCATATTAATGAAGATGAATGGCAGCACCTAACATTTGACTACATTATGGAAATGCCAGAAAAAGTTTATCG
GGCAGTAGGTTGTGAAGAGTGCCGGCATACGGGTTATAAAGGTCGAATCGGCATTTATGAGTTTATGCCAGTTAGTCTTG
AGCTTAAGCATCTTATTAGCAGTCATGCGACATTAAATGAATTAAGAAGCCAAACTAAAAAAGAAAGTGTAGAGCCTTTA
AGAATTGCAGGAACTCGCAAAGTTATTGAAGGTTTGACCACCTTGGAAGAGGTATTGCGGGTTGTTCCATTAAATTAA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(209-474)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(63-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.993

100

0.374