Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | QEP67_RS08260 | Genome accession | NZ_CP123058 |
| Coordinates | 1559953..1560732 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus cereus group sp. MS39 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1527690..1563069 | 1559953..1560732 | within | 0 |
Gene organization within MGE regions
Location: 1527690..1563069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QEP67_RS08100 (QEP67_08090) | - | 1528357..1529037 (+) | 681 | WP_002096352.1 | thiamine diphosphokinase | - |
| QEP67_RS08105 (QEP67_08095) | spoVM | 1529104..1529184 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| QEP67_RS08110 (QEP67_08100) | rpmB | 1529258..1529446 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| QEP67_RS08115 (QEP67_08105) | - | 1529822..1530184 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| QEP67_RS08120 (QEP67_08110) | - | 1530207..1531883 (+) | 1677 | WP_000027123.1 | DAK2 domain-containing protein | - |
| QEP67_RS08125 (QEP67_08115) | recG | 1532167..1534215 (+) | 2049 | WP_001006891.1 | ATP-dependent DNA helicase RecG | - |
| QEP67_RS08130 (QEP67_08120) | fapR | 1534304..1534897 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| QEP67_RS08135 (QEP67_08125) | plsX | 1534894..1535886 (+) | 993 | WP_000684108.1 | phosphate acyltransferase PlsX | - |
| QEP67_RS08140 (QEP67_08130) | fabD | 1535901..1536845 (+) | 945 | WP_000516944.1 | ACP S-malonyltransferase | - |
| QEP67_RS08145 (QEP67_08135) | fabG | 1536845..1537585 (+) | 741 | WP_000911777.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| QEP67_RS08150 (QEP67_08140) | acpP | 1537655..1537888 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| QEP67_RS08155 (QEP67_08145) | rncS | 1537947..1538684 (+) | 738 | WP_001146867.1 | ribonuclease III | - |
| QEP67_RS08160 (QEP67_08150) | smc | 1538832..1542401 (+) | 3570 | WP_064470306.1 | chromosome segregation protein SMC | - |
| QEP67_RS08165 (QEP67_08155) | ftsY | 1542417..1543406 (+) | 990 | WP_000007661.1 | signal recognition particle-docking protein FtsY | - |
| QEP67_RS08170 (QEP67_08160) | - | 1543540..1543872 (+) | 333 | WP_000891061.1 | putative DNA-binding protein | - |
| QEP67_RS08175 (QEP67_08165) | ffh | 1543885..1545234 (+) | 1350 | WP_000863466.1 | signal recognition particle protein | - |
| QEP67_RS08180 (QEP67_08170) | rpsP | 1545335..1545607 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| QEP67_RS08185 (QEP67_08175) | - | 1545622..1545849 (+) | 228 | WP_000737397.1 | KH domain-containing protein | - |
| QEP67_RS08190 (QEP67_08180) | rimM | 1545971..1546486 (+) | 516 | WP_000170282.1 | ribosome maturation factor RimM | - |
| QEP67_RS08195 (QEP67_08185) | trmD | 1546486..1547220 (+) | 735 | WP_000686894.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| QEP67_RS08200 (QEP67_08190) | rplS | 1547367..1547711 (+) | 345 | WP_001186518.1 | 50S ribosomal protein L19 | - |
| QEP67_RS08205 (QEP67_08195) | lepB | 1547813..1548364 (+) | 552 | WP_000711855.1 | signal peptidase I | - |
| QEP67_RS08210 (QEP67_08200) | ylqF | 1548385..1549275 (+) | 891 | WP_000236708.1 | ribosome biogenesis GTPase YlqF | - |
| QEP67_RS08215 (QEP67_08205) | - | 1549327..1550100 (+) | 774 | WP_001174726.1 | ribonuclease HII | - |
| QEP67_RS08220 (QEP67_08210) | sucC | 1550295..1551455 (+) | 1161 | WP_001020778.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| QEP67_RS08225 (QEP67_08215) | sucD | 1551475..1552377 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| QEP67_RS08230 (QEP67_08220) | dprA | 1552465..1553334 (+) | 870 | WP_000818023.1 | DNA-processing protein DprA | - |
| QEP67_RS08235 (QEP67_08225) | topA | 1553479..1555557 (+) | 2079 | WP_001286953.1 | type I DNA topoisomerase | - |
| QEP67_RS08240 (QEP67_08230) | trmFO | 1555606..1556910 (+) | 1305 | WP_000211996.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| QEP67_RS08245 (QEP67_08235) | xerC | 1556976..1557875 (+) | 900 | WP_001101235.1 | tyrosine recombinase XerC | - |
| QEP67_RS08250 (QEP67_08240) | hslV | 1557919..1558461 (+) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| QEP67_RS08255 (QEP67_08245) | hslU | 1558484..1559875 (+) | 1392 | WP_000550070.1 | ATP-dependent protease ATPase subunit HslU | - |
| QEP67_RS08260 (QEP67_08250) | codY | 1559953..1560732 (+) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| QEP67_RS08265 (QEP67_08255) | rpsB | 1561084..1561785 (+) | 702 | WP_000111484.1 | 30S ribosomal protein S2 | - |
| QEP67_RS08270 (QEP67_08260) | tsf | 1561889..1562776 (+) | 888 | WP_001018585.1 | translation elongation factor Ts | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=818040 QEP67_RS08260 WP_000421290.1 1559953..1560732(+) (codY) [Bacillus cereus group sp. MS39]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=818040 QEP67_RS08260 WP_000421290.1 1559953..1560732(+) (codY) [Bacillus cereus group sp. MS39]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACGCAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACGCAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |