Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QEP67_RS05400 Genome accession   NZ_CP123058
Coordinates   1040405..1042741 (+) Length   778 a.a.
NCBI ID   WP_000528051.1    Uniprot ID   A0AAU8F933
Organism   Bacillus cereus group sp. MS39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1035405..1047741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP67_RS05380 (QEP67_05375) - 1036809..1037225 (+) 417 WP_000704116.1 Rrf2 family transcriptional regulator -
  QEP67_RS05385 (QEP67_05380) - 1037261..1038406 (+) 1146 WP_000439915.1 cysteine desulfurase family protein -
  QEP67_RS05390 (QEP67_05385) mnmA 1038423..1039538 (+) 1116 WP_001038022.1 tRNA 2-thiouridine(34) synthase MnmA -
  QEP67_RS05395 (QEP67_05390) - 1039649..1040308 (+) 660 WP_353706536.1 tetratricopeptide repeat protein -
  QEP67_RS05400 (QEP67_05395) recD2 1040405..1042741 (+) 2337 WP_000528051.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QEP67_RS05405 (QEP67_05400) - 1042869..1043057 (+) 189 WP_000469281.1 hypothetical protein -
  QEP67_RS05410 (QEP67_05405) - 1043076..1043204 (+) 129 WP_001053553.1 YrzQ family protein -
  QEP67_RS05415 (QEP67_05410) - 1043240..1043452 (-) 213 WP_000242555.1 hypothetical protein -
  QEP67_RS05420 (QEP67_05415) - 1043629..1044696 (+) 1068 WP_000793120.1 AI-2E family transporter -
  QEP67_RS05425 (QEP67_05420) - 1044735..1045079 (-) 345 WP_000209469.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87234.71 Da        Isoelectric Point: 5.2570

>NTDB_id=818032 QEP67_RS05400 WP_000528051.1 1040405..1042741(+) (recD2) [Bacillus cereus group sp. MS39]
MGNQHAMDLFEEDKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIIGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGQIEEQLSVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=818032 QEP67_RS05400 WP_000528051.1 1040405..1042741(+) (recD2) [Bacillus cereus group sp. MS39]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGATAAAAAGTTTATAAAAGCGCAAGTTCTTCACACCATTTTCCA
CAATGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAGACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACATTTAAGAAAGAATTGCCGCAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGATCATCTTGGGGAACATGCCATCTCTAAAATTATGGACG
ATCCTGATGCGTTAAATGGTGTTGTTAACAAGCAAAAAGCGCAAGAAATATATGAGACAATTGTTGAACATCAAGGACTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACGTTAGAAGTGATTCGTAATAATCCGTATAAGCTTATTGAAGAAGTGGACGGGATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGAATATCGGGTAATCACGATGATCGTGTACGTGCAGGGTGTTTTTATACGCTAGAGAATGTTTCG
CTGCAACTCGGTCACGTTTATATGGGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAACCAAGAAGGAAG
AGTGACAGAGGAAGACATTATAGGCTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCATCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAGGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTCAAATTGAAGAACAACTGAGTGTACAGTATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCATCACTCCACGGATTATCGTTAAATCCGAATGAATATAGCGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGAGCAGCAAAGCGAATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGGTT
ACTTGGTTGGACGCCAGAAGGGTCTTTCCAGCGCAATGAAACGGATCCGGTTCAAGGGAAGTTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACGAACATCCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTACCATCTGTAGGGCCTGGACAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCGACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCGTTTATCGGCTGTACAGGAGCTCAAATTGTTGAAGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGCCCTGCCGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAACCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ATCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAGCCAGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAACAACAAGATATGATTATCGTTTCATTTGATGGCATTGAAGTAACATATAC
AAAGCCAGACTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTACACTGGCATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GGGTCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.637

100

0.576