Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QBD03_RS09555 Genome accession   NZ_CP122959
Coordinates   1927155..1927715 (-) Length   186 a.a.
NCBI ID   WP_112206909.1    Uniprot ID   A0AAF0K3V2
Organism   Latilactobacillus sakei strain HUP1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1922155..1932715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS09525 (QBD03_09525) rplA 1923263..1923952 (-) 690 WP_101378060.1 50S ribosomal protein L1 -
  QBD03_RS09530 (QBD03_09530) rplK 1924051..1924476 (-) 426 WP_004270859.1 50S ribosomal protein L11 -
  QBD03_RS09535 (QBD03_09535) - 1924602..1925465 (-) 864 WP_280102794.1 alpha/beta fold hydrolase -
  QBD03_RS09540 (QBD03_09540) nusG 1926045..1926593 (-) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  QBD03_RS09545 (QBD03_09545) secE 1926691..1926864 (-) 174 WP_016265665.1 preprotein translocase subunit SecE -
  QBD03_RS09550 (QBD03_09550) rpmG 1926880..1927029 (-) 150 WP_011375366.1 50S ribosomal protein L33 -
  QBD03_RS09555 (QBD03_09555) sigH 1927155..1927715 (-) 561 WP_112206909.1 sigma-70 family RNA polymerase sigma factor Regulator
  QBD03_RS09560 (QBD03_09560) - 1927793..1928326 (-) 534 WP_016265667.1 NYN domain-containing protein -
  QBD03_RS09565 (QBD03_09565) rlmB 1928330..1929217 (-) 888 WP_082267747.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QBD03_RS09570 (QBD03_09570) - 1929204..1929611 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  QBD03_RS09575 (QBD03_09575) cysS 1929608..1931014 (-) 1407 WP_280103377.1 cysteine--tRNA ligase -
  QBD03_RS09580 (QBD03_09580) - 1931445..1932557 (-) 1113 WP_035146631.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22115.36 Da        Isoelectric Point: 7.4752

>NTDB_id=817534 QBD03_RS09555 WP_112206909.1 1927155..1927715(-) (sigH) [Latilactobacillus sakei strain HUP1]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLLIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=817534 QBD03_RS09555 WP_112206909.1 1927155..1927715(-) (sigH) [Latilactobacillus sakei strain HUP1]
ATGGAACAAACAAAGCGCGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTTAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGTCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.237

100

0.962