Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAD58_RS07240 Genome accession   NZ_CP122956
Coordinates   1501106..1501387 (-) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT112     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1496106..1506387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD58_RS07220 (QAD58_07225) - 1496818..1498158 (-) 1341 WP_286448316.1 hypothetical protein -
  QAD58_RS07230 (QAD58_07235) comB4 1498478..1500841 (-) 2364 WP_286448317.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAD58_RS07235 (QAD58_07240) comB3 1500843..1501106 (-) 264 WP_286448318.1 competence protein ComB Machinery gene
  QAD58_RS07240 (QAD58_07245) comB2 1501106..1501387 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  QAD58_RS07245 (QAD58_07250) - 1501532..1502359 (-) 828 WP_286448319.1 DUF5718 family protein -
  QAD58_RS07250 (QAD58_07255) - 1502449..1503501 (-) 1053 WP_286448320.1 MnmA/TRMU family protein -
  QAD58_RS07255 (QAD58_07260) dnaG 1503498..1505177 (-) 1680 WP_286448321.1 DNA primase -
  QAD58_RS07260 (QAD58_07265) groES 1505452..1505808 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=817499 QAD58_RS07240 WP_001272690.1 1501106..1501387(-) (comB2) [Helicobacter pylori strain BT112]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=817499 QAD58_RS07240 WP_001272690.1 1501106..1501387(-) (comB2) [Helicobacter pylori strain BT112]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1