Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAP06_RS00545 Genome accession   NZ_CP122954
Coordinates   116501..116785 (-) Length   94 a.a.
NCBI ID   WP_000736478.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS06     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111501..121785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP06_RS00520 (QAP06_00520) - 112133..113272 (-) 1140 Protein_101 VirB8/TrbF family protein -
  QAP06_RS00525 (QAP06_00525) - 113265..113405 (-) 141 WP_000789926.1 hypothetical protein -
  QAP06_RS00530 (QAP06_00530) - 113402..115980 (-) 2579 Protein_103 VirB4 family type IV secretion/conjugal transfer ATPase -
  QAP06_RS00535 (QAP06_00535) - 115980..116216 (-) 237 WP_001183709.1 hypothetical protein -
  QAP06_RS00540 (QAP06_00540) comB3 116227..116490 (-) 264 WP_286465791.1 competence protein ComB Machinery gene
  QAP06_RS00545 (QAP06_00545) comB2 116501..116785 (-) 285 WP_000736478.1 TrbC/VirB2 family protein Machinery gene
  QAP06_RS00550 (QAP06_00550) - 116782..117261 (-) 480 WP_286465794.1 hypothetical protein -
  QAP06_RS00555 (QAP06_00555) - 117365..118153 (-) 789 WP_286465795.1 integrase -
  QAP06_RS00560 (QAP06_00560) - 118348..118803 (-) 456 WP_286465797.1 hypothetical protein -
  QAP06_RS00565 (QAP06_00565) - 118835..119254 (-) 420 WP_286465798.1 hypothetical protein -
  QAP06_RS00570 (QAP06_00570) - 119263..119925 (-) 663 Protein_111 toll/interleukin-1 receptor domain-containing protein -
  QAP06_RS00575 (QAP06_00575) - 120135..120383 (-) 249 WP_286465799.1 hypothetical protein -
  QAP06_RS00580 (QAP06_00580) sppA 120454..121332 (+) 879 WP_286465800.1 signal peptide peptidase SppA -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10683.00 Da        Isoelectric Point: 10.9123

>NTDB_id=817437 QAP06_RS00545 WP_000736478.1 116501..116785(-) (comB2) [Helicobacter pylori strain BS06]
MKKLSHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=817437 QAP06_RS00545 WP_000736478.1 116501..116785(-) (comB2) [Helicobacter pylori strain BS06]
ATGAAAAAATTAAGTCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterProScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.143

96.809

0.553