Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QAP05_RS07100 Genome accession   NZ_CP122952
Coordinates   1482015..1482296 (-) Length   93 a.a.
NCBI ID   WP_140598297.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS27-1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1477015..1487296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP05_RS07080 (QAP05_07075) - 1477726..1479066 (-) 1341 WP_180398557.1 hypothetical protein -
  QAP05_RS07090 (QAP05_07085) comB4 1479387..1481750 (-) 2364 WP_286491170.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP05_RS07095 (QAP05_07090) comB3 1481752..1482015 (-) 264 WP_077648315.1 competence protein ComB Machinery gene
  QAP05_RS07100 (QAP05_07095) comB2 1482015..1482296 (-) 282 WP_140598297.1 TrbC/VirB2 family protein Machinery gene
  QAP05_RS07105 (QAP05_07100) - 1482441..1483268 (-) 828 WP_286491171.1 DUF5718 family protein -
  QAP05_RS07110 (QAP05_07105) - 1483357..1484409 (-) 1053 WP_286491172.1 MnmA/TRMU family protein -
  QAP05_RS07115 (QAP05_07110) dnaG 1484406..1486085 (-) 1680 WP_286491173.1 DNA primase -
  QAP05_RS07120 (QAP05_07115) groES 1486369..1486725 (+) 357 WP_000671947.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10547.81 Da        Isoelectric Point: 9.0456

>NTDB_id=817411 QAP05_RS07100 WP_140598297.1 1482015..1482296(-) (comB2) [Helicobacter pylori strain BS27-1]
MSAYFLKIIFLVGLCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=817411 QAP05_RS07100 WP_140598297.1 1482015..1482296(-) (comB2) [Helicobacter pylori strain BS27-1]
ATGTCCGCTTATTTTTTAAAAATCATTTTTTTAGTAGGCTTGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

96.774

100

0.968