Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   R8563_RS08320 Genome accession   NZ_AP026917
Coordinates   1617978..1619249 (+) Length   423 a.a.
NCBI ID   WP_001113214.1    Uniprot ID   A0A0H2URL5
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1612978..1624249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS08280 (PC0007_16310) - 1613603..1614637 (-) 1035 WP_000747915.1 ATP-binding protein -
  R8563_RS08285 (PC0007_16320) - 1614747..1614911 (-) 165 WP_000421870.1 hypothetical protein -
  R8563_RS08290 (PC0007_16330) - 1614961..1615503 (-) 543 WP_000891119.1 hypothetical protein -
  R8563_RS08295 (PC0007_16340) - 1615559..1616029 (-) 471 WP_000257102.1 DUF3013 family protein -
  R8563_RS08300 (PC0007_16350) - 1616320..1616772 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  R8563_RS08305 (PC0007_16360) - 1616809..1616988 (-) 180 WP_001132282.1 type II toxin-antitoxin system HicA family toxin -
  R8563_RS08310 (PC0007_16370) - 1617125..1617304 (-) 180 WP_001048906.1 hypothetical protein -
  R8563_RS08315 (PC0007_16380) - 1617508..1617708 (-) 201 WP_000818077.1 hypothetical protein -
  R8563_RS08320 (PC0007_16390) rarA 1617978..1619249 (+) 1272 WP_001113214.1 replication-associated recombination protein A Machinery gene
  R8563_RS08330 (PC0007_16400) - 1619796..1621115 (-) 1320 WP_000502537.1 glycoside hydrolase family 32 protein -
  R8563_RS08335 (PC0007_16410) - 1621125..1622741 (-) 1617 WP_000669751.1 ABC transporter substrate-binding protein -
  R8563_RS08340 (PC0007_16420) - 1622770..1623660 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46999.46 Da        Isoelectric Point: 5.9471

>NTDB_id=81741 R8563_RS08320 WP_001113214.1 1617978..1619249(+) (rarA) [Streptococcus pneumoniae strain PZ900700007]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=81741 R8563_RS08320 WP_001113214.1 1617978..1619249(+) (rarA) [Streptococcus pneumoniae strain PZ900700007]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTAGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATTCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 8G28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57

Multiple sequence alignment