Detailed information NTG0817405

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: QAP05_RS06980
• Genome accession: NZ_CP122952
• Coordinates: 1456747..1457709 (-)
• Length: 320 a.a.
• NCBI ID: WP_286491157.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS27-1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1451747..1462709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP05_RS06960 (QAP05_06955)	-	1452053..1452985 (-)	933	WP_286491155.1	GDP-L-fucose synthase	-
QAP05_RS06965 (QAP05_06960)	gmd	1452978..1454122 (-)	1145	Protein_1365	GDP-mannose 4,6-dehydratase	-
QAP05_RS06970 (QAP05_06965)	-	1454136..1455548 (-)	1413	WP_286491156.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP05_RS06975 (QAP05_06970)	comB10	1455618..1456754 (-)	1137	WP_180411350.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP05_RS06980 (QAP05_06975)	comB9	1456747..1457709 (-)	963	WP_286491157.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP05_RS06985 (QAP05_06980)	comB8	1457709..1458452 (-)	744	WP_001208392.1	virB8 family protein	Machinery gene
QAP05_RS06990 (QAP05_06985)	comB7	1458449..1458562 (-)	114	WP_001217870.1	hypothetical protein	Machinery gene
QAP05_RS06995 (QAP05_06990)	comB6	1458578..1459633 (-)	1056	WP_286491158.1	P-type conjugative transfer protein TrbL	Machinery gene
QAP05_RS07000 (QAP05_06995)	-	1459642..1460646 (-)	1005	WP_286491159.1	PDZ domain-containing protein	-
QAP05_RS07005 (QAP05_07000)	-	1460646..1460948 (-)	303	WP_120956962.1	YbaB/EbfC family nucleoid-associated protein	-
QAP05_RS07010 (QAP05_07005)	panD	1460951..1461304 (-)	354	WP_000142250.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36757.29 Da
• Isoelectric Point: 9.3801

>NTDB_id=817405 QAP05_RS06980 WP_286491157.1 1456747..1457709(-) (comB9) [Helicobacter pylori strain BS27-1]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYRIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNSVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=817405 QAP05_RS06980 WP_286491157.1 1456747..1457709(-) (comB9) [Helicobacter pylori strain BS27-1]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACCTTGAATGTTGATTACTTTCAAGGGCAAACCTATAGAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGTATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCTTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACTCGGTGAATACTAGGATTGTGGGCGACTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.104	100	0.928