Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   QAP01_RS07225 Genome accession   NZ_CP122950
Coordinates   1521285..1521548 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS28-1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1516285..1526548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP01_RS07210 (QAP01_07210) - 1517279..1518619 (-) 1341 WP_286498191.1 COG3014 family protein -
  QAP01_RS07220 (QAP01_07220) comB4 1518920..1521283 (-) 2364 WP_286498192.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  QAP01_RS07225 (QAP01_07225) comB3 1521285..1521548 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  QAP01_RS07230 (QAP01_07230) comB2 1521548..1521829 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  QAP01_RS07235 (QAP01_07235) - 1521975..1522802 (-) 828 WP_286498193.1 DUF5718 family protein -
  QAP01_RS07240 (QAP01_07240) - 1522895..1523947 (-) 1053 WP_286498194.1 MnmA/TRMU family protein -
  QAP01_RS07245 (QAP01_07245) dnaG 1523944..1525623 (-) 1680 WP_286498195.1 DNA primase -
  QAP01_RS07250 (QAP01_07250) groES 1525908..1526264 (+) 357 WP_000671940.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=817369 QAP01_RS07225 WP_000584956.1 1521285..1521548(-) (comB3) [Helicobacter pylori strain BS28-1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=817369 QAP01_RS07225 WP_000584956.1 1521285..1521548(-) (comB3) [Helicobacter pylori strain BS28-1]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1